Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq169 102 7e-17 seq1476 100 2e-16 seq167 89.7 4e-13 seq100 89.7 4e-13 seq1027 86.0 5e-12 >seq169 Length=810068 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || ||||||||||| ||||| |||||| | ||| || ||| || Sbjct 364368 AACCAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCGGCAAGAGTCCGGCCATCCTC 364309 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || || ||| | || | ||||| ||||| || ||||| ||||| ||||| Sbjct 364308 TAGCTGCTTTCCGGCGAAAATCAACCGCTGCTGGTCAGGTGGAATACCTTCCTTGTCTTG 364249 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| || ||| | | |||| || || | | ||| || |||| || | || || Sbjct 364248 AATTTTGGCTTTGACATTATCAATTGTATCTGAGCTTTCCACCTCCAAAGTTATAGTCTT 364189 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 |||||| ||||| || ||||||||||||||| || Sbjct 364188 GCCGGTGAGAGTCTTCACAAAAATCTGCATGCCT 364155 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| | ||| | || ||||| ||||| || ||||||||| | ||||| ||| || Sbjct 364140 AACAAGATGAAGAGTGGATTCCTTTTGTATATTGTAATCGGCGAGGGTACGGCCATCCTC 364081 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 ||| || ||||| ||| | || || | || ||||| |||||||| ||||| || || Sbjct 364080 AAGCTGCTTACCGGCGAAAATCAGCCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTG 364021 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 |||||| || | | || | ||||||| | ||||| || | || | ||||| Sbjct 364020 AATCTTAGCCTTAACGTTGTCGATTGTGTCGGAGCTCTCGACCTCGAGAGTTATAGTTTT 363961 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||| || ||||| ||||| || ||||| Sbjct 363960 GCCGGTGAGGGTTTTAACAAAGATTTGCAT 363931 >seq1476 Length=5289327 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || | || | || | || ||||| || ||||| ||||||||| Sbjct 642747 ATTCCACCACGAAGCCTGAGCACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCG 642806 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || |||||| ||||| ||||| ||| |||| || | ||| ||||| || Sbjct 642807 GCCAAAGTTCGGCCATCTTCCAGTTGCTTACCGGCGAAGATCAGCCTCTGCTGGTCTGGT 642866 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||| ||| || | | |||| ||||| || || Sbjct 642867 GGGATGCCCTCCTTGTCTTGAATTTTTGCCTTCACGTTATCAATAGTGTCACTGCTCTCA 642926 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || |||| || || || ||||||||||| Sbjct 642927 ACCTCCAGGGTGATGGTCTTTCCAGTCAAGGTCTTGACGAAAATCTGCAT 642976 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || || ||||||||| || |||||| |||||| || ||||| || Sbjct 643464 GTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCCATCTTCGAGCTGTTTCCCG 643523 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| |||||||| ||||| || || || ||||||||||| || || ||| Sbjct 643524 GCAAAGATAAGACGCTGCTGGTCTGGCGGGATACCTTCTTTGTCTTGGATTTTGGCTTTG 643583 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| || || || || | || | || |||||||| || || Sbjct 643584 ACGTTGTCGATGGTGTCGCTGCTCTCTACCTCGAGAGTGATAGTCTTGCCGGTGAGGGTC 643643 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 643644 TTAACGAAGATCTGCAT 643660 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || |||||||| |||||| || ||||| || || |||||||| || Sbjct 643008 GTAGACTCCTTCTGAATGTTATAATCGGCCAAGGTACGCCCGTCCTCTAGTTGTTTTCCG 643067 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| || || ||||| || ||||| ||| ||| || Sbjct 643068 GCGAAGATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATTTTTGCCTTC 643127 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| || || || || | ||| | || || || |||| || Sbjct 643128 ACGTTGTCAATAGTGTCGCTGCTCTCAACCTCGAGGGTGATGGTCTTCCCAGTCAAGGTC 643187 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 643188 TTAACGAAAATCTGCAT 643204 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||||||| || ||||| || || || ||||| || Sbjct 643236 GTGGACTCCTTCTGAATGTTGTAATCGGCCAAGGTACGCCCGTCCTCTAGCTGTTTTCCG 643295 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || || || ||||| ||||| || || ||||||| || Sbjct 643296 GCGAAGATCAGCCTCTGCTGATCTGGGGGAATTCCTTCCTTATCCTGAATCTTTGCCTTG 643355 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| | ||| || |||| || | || || || |||| || Sbjct 643356 ACATTATCGATGGTGTCGCTACTTTCAACCTCCAGAGTAATAGTCTTTCCAGTCAAGGTC 643415 Query 114366 TTTACAAAAATCTGCATGGCT 114386 || || || ||||||||| || Sbjct 643416 TTGACGAAGATCTGCATGCCT 643436 >seq167 Length=3484751 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 || |||||||| || | | || | || | || || || || || ||||||||||| Sbjct 2202950 ATGCCGCCACGGAGACGGAGGACGAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCG 2203009 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| || || || ||||||||| || || || ||| |||| | | |||||| ||||| Sbjct 2203010 GCTAAT-GTGCGGCCATCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGTTGATCCGG 2203068 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| || || ||||| || | | |||| || |||| | || Sbjct 2203069 TGGAATTCCTTCCTTATCTTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTC 2203128 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | || | || ||||||||||| ||||| || || |||||||| Sbjct 2203129 GACCTCGAGAGTAATAGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2203179 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||||||||||||||||||||| | || | || ||||||||||| ||||| || || || Sbjct 1288778 ATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGTTGGTCCGGGGGAATACCCTCCTT 1288719 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| || || || | | |||| ||||| | | || || || | ||| | Sbjct 1288718 GTCCTGGATTTTAGCCTTCACATTGTCAATTGTGTCAGAGCTCTCAACCTCGAGGGTAAT 1288659 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| || ||||| ||||| |||||||||||||| Sbjct 1288658 GGTTTTCCCTGTCAGGGTTTTGACAAAAATCTGCAT 1288623 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || ||||| | || || || || ||||||||||| || Sbjct 1288396 ATGCCACCACGGAGACGAAGCACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCA 1288337 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||| || || || |||||||| |||| || | ||| ||||| || Sbjct 1288336 GCAAGGGTGCGCCCATCCTCGAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGG 1288277 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| ||| | | |||| |||||| | | || Sbjct 1288276 GGAATACCCTCCTTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTGTCAGAGCTCTCA 1288217 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| || | ||||| ||||| || ||||| Sbjct 1288216 ACCTCCAAGGTGATGGTCTTGCCAGTTAAGGTTTTCACAAAGATTTGCAT 1288167 >seq100 Length=1654266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| || ||| || |||||| || || || || Sbjct 548135 GTGGACTCCTTCTGGATGTTGTAATCTGCCAAAGTTCGGCCATCTTCCAGCTGCTTCCCT 548076 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| |||||||| ||||| || || ||||| ||||| || Sbjct 548075 GCAAAGATGAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTC 548016 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | | || || |||| ||| | || || || |||| ||| Sbjct 548015 ACATTGTCAATGGTATCAGAGCTCTCCACCTCCAGGGTGATGGTCTTCCCTGTCAAAGTC 547956 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 547955 TTCACAAAAATCTGCAT 547939 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| || ||| || |||||| || || || || Sbjct 555204 GTGGACTCCTTCTGGATGTTGTAATCTGCCAAAGTTCGGCCATCTTCCAGCTGCTTCCCT 555145 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||| |||| ||||| || || ||||| ||||| || Sbjct 555144 GCAAAGATGAGCCTCTGCTGGACCGGGGGAATTCCCTCCTTGTCCTGGATCTTAGCCTTC 555085 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||| || | | || || |||| ||| | || || || |||| ||| Sbjct 555084 ACATTGTCAATGGTATCAGAGCTCTCCACCTCCAGGGTGATGGTCTTCCCTGTCAAAGTC 555025 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 555024 TTCACAAAAATCTGCAT 555008 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || || || ||||||||||| || || | ||||| |||||| Sbjct 547008 AACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCCGCAAGGGTACGGCCATCTTC 546949 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||||| ||||| |||| | | ||| || || || ||||| ||||| ||||| Sbjct 546948 CAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATCCCTTCCTTGTCCTG 546889 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| || ||||| | |||| ||||| | | ||| || || | ||| | || || Sbjct 546888 AATTTTGGCTTTTACGTTGTCAATAGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTT 546829 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || ||||| ||||| || ||||| Sbjct 546828 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 546799 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || || || ||||||||||| || || | ||||| |||||| Sbjct 554077 AACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCCGCAAGGGTACGGCCATCTTC 554018 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | ||||| ||||| |||| | | ||| || || || ||||| ||||| ||||| Sbjct 554017 CAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCAGGGGGAATCCCTTCCTTGTCCTG 553958 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||| || ||||| | |||| ||||| | | ||| || || | ||| | || || Sbjct 553957 AATTTTGGCTTTTACGTTGTCAATAGTGTCTGAGCTTTCCACCTCAAGGGTGATGGTCTT 553898 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || ||||| ||||| || ||||| Sbjct 553897 GCCAGTAAGGGTTTTCACAAAGATTTGCAT 553868 >seq1027 Length=3367805 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 |||| || ||||| || | | || || || | || || ||||| |||||||| || | Sbjct 416149 AAATGCCACCACGAAGGCGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATGTTATAGT 416208 Query 114211 CGCTCAT-AGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 | ||| ||||||| || ||||| ||||| || || | || | | ||| ||||| Sbjct 416209 CAG-CATGAGTACGACCGTCCTCAAGCTGTTTCCCTGCAAAAATCAACCTCTGCTGGTCT 416267 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGA 114328 || || ||||| || ||||| ||| ||| | |||| | | |||| |||||| | | Sbjct 416268 GGGGGGATGCCCTCCTTGTCTTGAAT-TTTGGCTTTAACATTGTCAATGGTGTCAGAGCT 416326 Query 114329 TTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || |||| || | || || || || || || || ||||||||||||||| Sbjct 416327 CTCTACTTCCAAAGTAATGGTCTTCCCTGTGAGGGTCTTCACAAAAATCTGCATG 416381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420103554782688