Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq813 91.5 1e-13 seq1476 87.8 1e-12 seq100 84.2 2e-11 seq229 82.4 6e-11 seq54 82.4 6e-11 >seq813 Length=767751 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| |||| ||| ||||| ||||| || |||||||||||||| ||||| || Sbjct 436287 CCTCCTCTAAGCCTCAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTATAATCAGCA 436346 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || |||||||||||||| ||||| |||| | ||||||||| Sbjct 436347 AGAGTTCGGCCATCTTCCAATTGCTTGCCAGCAAAAATCAATCTCTGCTGATC 436399 >seq1476 Length=5289327 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || ||||| || ||||| ||| ||||||||||||||||||||| ||| Sbjct 643206 CCTCCACGGAGGCGGAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCC 643265 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| |||| || | || || ||||| || ||||| | ||||||||| Sbjct 643266 AAGGTACGCCCGTCCTCTAGCTGTTTTCCGGCGAAGATCAGCCTCTGCTGATC 643318 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || || ||||| || ||||| || ||||||||||||||| ||||| ||| Sbjct 642978 CCTCCACGGAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTATAATCGGCC 643037 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || ||| |||| || | ||| || ||||| || ||||| | |||||| || || Sbjct 643038 AAGGTACGCCCGTCCTCTAGTTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGG 643097 Query 34021 ACGCTCTCTTTGTCCATAATTTTT 34044 | || ||| ||||| ||||||| Sbjct 643098 ATGCCCTCCTTGTCTTGAATTTTT 643121 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||| || || || ||| ||||||||||| |||||||| ||||| ||| Sbjct 642759 AGCCTGAGCACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCGGCCAAAGTTCGG 642818 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||| |||||| ||||| || ||||| | |||||| || || | || ||| Sbjct 642819 CCATCTTCCAGTTGCTTACCGGCGAAGATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCC 642878 Query 34030 TTGTCCATAATTTTT 34044 ||||| ||||||| Sbjct 642879 TTGTCTTGAATTTTT 642893 >seq100 Length=1654266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 ||| ||||| | || || || || ||||| || ||| ||||||||| ||||||||||| Sbjct 548169 GAAGCCTCCACGGAGACGGAGGACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATC 548110 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 |||||| ||| | || |||| ||||| || ||||| || || | |||||| ||| Sbjct 548109 TGCCAAAGTTCGGCCATCTTCCAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGG 548050 Query 34017 CGGCACGCTCTCTTTGTCC 34035 || | | ||| |||||| Sbjct 548049 GGGAATTCCCTCCTTGTCC 548031 >seq229 Length=2021663 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/228 (68%), Gaps = 20/228 (9%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || |||| ||| || ||| ||||||||| |||||||| || || || || || Sbjct 544834 AGACGAAGGACCAAATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTGCG 544892 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || |||| |||||| || ||||| ||||| | |||||| || ||| | | ||| Sbjct 544893 GCCATCCTCCAGTTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGCGGGATCCCCTC 544952 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---GCATTCGAC 34085 ||||||| ||||||| ||| | || ||||| | | || || |||||| Sbjct 544953 TTTGTCCTGAATTTTTGCCTTGA---------CATTATCAATGGTGTCTGAGCTTTCGAC 545003 Query 34086 C------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || || ||||| ||||||||||| Sbjct 545004 TTCCAATGTGATAGTCTTGCCAGTGAGGGTCTTCACGAAGATTTGCAT 545051 >seq54 Length=3626826 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| |||| ||| ||||| ||||| || |||||||||||||| ||||| || Sbjct 3012300 CCTCCTCTAAGCCTCAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTATAATCAGCA 3012241 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| || |||||||||||||| | ||| |||| | ||||||||| Sbjct 3012240 ACAGTTCGGCAATCTTCCAATTGCTTGCCAGGAAAAATCAATCTCTGCTGATC 3012188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397033248671248