Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1476 111 2e-19 seq167 111 2e-19 seq596 105 7e-18 seq41 89.7 5e-13 seq100 82.4 8e-11 >seq1476 Length=5289327 Score = 111 bits (122), Expect = 2e-19 Identities = 141/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || ||||| ||| || |||||| || ||||| ||||| |||| | Sbjct 643467 GACTCCTTCTGGATATTGTAATCGGCCAAAGTACGGCCATCTTCGAGCTGTTTCCCGGCA 643526 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| || || |||||||||||||| |||||| ||| | Sbjct 643527 AAGATAAGACGCTGCTGGTCTGGCGGGATACCTTCTTTGTCTTGGATTTTGGCTTTGACG 643586 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | ||| ||||||| || | || || || || || || || Sbjct 643587 TTGTCGATGGTGTCGCTGCTCTCTACCTCGAGAGTGATAGTCTTGCCGGTGAGGGTCTTA 643646 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 643647 ACGAAGATCTGCAT 643660 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||| || ||| || |||||| |||||| |||||||| |||| Sbjct 643011 GACTCCTTCTGAATGTTATAATCGGCCAAGGTACGCCCGTCCTCTAGTTGTTTTCCGGCG 643070 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||| ||||| || || || || || ||||| ||| |||||| || | Sbjct 643071 AAGATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCT-TGAATTTTTGCCTTCAC 643129 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | |||||| | ||| ||||||| || | || || ||||||| || | Sbjct 643130 GTTGT-CAATAGTGTCGCTGCTCTCAACCTCGAGGGTGATGGTCTTCCCAGTCAAGGTCT 643188 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 643189 TAACGAAAATCTGCAT 643204 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||| ||| || |||||| |||||| || ||||| |||| Sbjct 643239 GACTCCTTCTGAATGTTGTAATCGGCCAAGGTACGCCCGTCCTCTAGCTGTTTTCCGGCG 643298 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| || | ||| || || || || || ||||| || || ||| | |||| || | Sbjct 643299 AAGATCAGCCTCTGCTGATCTGGGGGAATTCCTTCCTTATC-CTGAATCTTTGCCTTGAC 643357 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||||||| | || ||||| | || | || || ||||||| || || Sbjct 643358 ATTATCGATGGTGTCGCTACTTTCAACCTCCAGAGTAATAGTCTTTCCAGTCAAGGTCTT 643417 Query 138600 TACAAAAATCTGCATGGCT 138618 || || ||||||||| || Sbjct 643418 GACGAAGATCTGCATGCCT 643436 >seq167 Length=3484751 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | ||| |||| || ||||| | | || |||||||| || |||||||| Sbjct 1287937 CCACCCCTCAATCGCAGCACCAAATGGAGTGTGGATTCCTTTTGGATATTGTAGTCTGCA 1287878 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||||||||| ||||| | | |||| || | ||| ||||| || || Sbjct 1287877 AGTGTACGCCCGTCCTCGAGTTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGA 1287818 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| ||| ||| | |||| || | |||||||| ||||| Sbjct 1287817 ATTCCCTCTTTGTCCTGGATCTTTGCTTTGACATTG-TCAATGGTGTCGGAGCTTTCCAC 1287759 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| || ||||| ||||| || ||||| Sbjct 1287758 CTCAAGGGTGATTGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 1287711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || ||||| | | | |||||||| |||||||||||||| Sbjct 1288394 GCCACCACGGAGACGAAGCACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCAGC 1288335 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || ||| |||||||| || ||||| | | |||| || | ||| ||||| || || Sbjct 1288334 AAGGGTGCGCCCATCCTCGAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGG 1288275 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| || ||| | |||| || | |||||| | ||| | Sbjct 1288274 AATACCCTCCTTGTCTTGGATCTTGGCTTTCACATTG-TCAATGGTGTCAGAGCTCTCAA 1288216 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||| | ||||| ||||| || ||||| Sbjct 1288215 CCTCCAAGGTGATGGTCTTGCCAGTTAAGGTTTTCACAAAGATTTGCAT 1288167 Score = 86.0 bits (94), Expect = 6e-12 Identities = 114/156 (73%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 || || ||||||||||| | | | || | || ||||||||||| || ||||| || ||| Sbjct 1288777 TCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGTTGGTCCGGGGGAATACCCTCCTTG 1288718 Query 138520 TCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAG 138578 || |||||| || | ||||| | | ||||| | ||| ||||||| || | Sbjct 1288717 TCCTGGATTTTAGCCTTCACATTGT-CAATTGTGTCAGAGCTCTCAACCTCGAGGGTAAT 1288659 Query 138579 CGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || ||||| ||||| |||||||||||||| Sbjct 1288658 GGTTTTCCCTGTCAGGGTTTTGACAAAAATCTGCAT 1288623 >seq596 Length=4721113 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | || | ||| || || ||||| || | Sbjct 1300482 GACTCCTTCTGAATGTTGTAGTCTGCGAGGGTCCTGCCGTCTTCCAGCTGTTTTCCAGCG 1300541 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 ||||||||||||| |||||||| || || ||||| ||||| ||| || ||| | | Sbjct 1300542 AAGATTAGACGCTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCTTTCACA 1300601 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| |||| ||||| ||||||| || | || ||||| || || ||||| Sbjct 1300602 TTG-TCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTTACCCGTTAGGGTTTT 1300660 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 1300661 CACGAAGATCTGCAT 1300675 >seq41 Length=2736928 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | ||| || ||||| || || || |||| Sbjct 677273 GATTCCTTCTGGATGTTGTAGTCGGCAAGAGTGCGGCCATCCTCCAGCTGCTTTCCGGCG 677332 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 677333 AAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACA 677392 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | ||||| ||||| | || | ||| || || || || ||||| Sbjct 677393 TTATCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTC 677452 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 677453 ACGAAGATCTGCAT 677466 >seq100 Length=1654266 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||| | || || || | | | |||||||| || |||||||||||| Sbjct 547254 GCCACCTCTTAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 547195 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||| || ||||| || | | |||| || | ||| || || || || Sbjct 547194 AAGGGTACGGCCATCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGCTGATCTGGGGG 547135 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || ||||| | || | |||||| | |||||| Sbjct 547134 AATGCCCTCCTTGTCCTGGATCTTAGCTTTTACGTTATCAATGGTGTCTGAGCTCTCCAC 547075 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || || |||||||| || ||||| Sbjct 547074 TTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTTACAAAGATTTGCAT 547027 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| | ||| | || || || | | | |||||||| || |||||||||||| Sbjct 554323 GCCACCTCTTAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 554264 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| ||||| || ||||| || | | |||| || | ||| || || || || Sbjct 554263 AAGGGTACGGCCATCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGCTGATCTGGGGG 554204 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || ||||| | || | |||||| | |||||| Sbjct 554203 AATGCCCTCCTTGTCCTGGATCTTAGCTTTTACGTTATCAATGGTGTCTGAGCTCTCCAC 554144 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || || |||||||| || ||||| Sbjct 554143 TTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTTACAAAGATTTGCAT 554096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496225031441280