Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq167 125 6e-24 seq169 123 2e-23 seq596 102 7e-17 seq271 87.8 2e-12 seq1476 86.0 6e-12 seq1027 86.0 6e-12 seq813 84.2 2e-11 >seq167 Length=3484751 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTG 45196 |||||| || |||||||| || |||||||||||| | |||| | || || | ||| Sbjct 2202748 ATGCAGTGTGGATTCCTTCTGAATATTATAATCGGCAAGGGTTCTTCCGTCTTCGAGTTG 2202807 Query 45197 TTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTT 45256 |||||| ||| | ||||||| ||||||||||| ||||| ||||| || ||||| || || Sbjct 2202808 TTTTCCAGCGAAGATCAATCTCTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTT 2202867 Query 45257 TTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | ||| || || ||||||||| ||||||| |||||||| || Sbjct 2202868 GGCCTTGACATTATCGATGGTATCAGAGCTCTCGACTTCAAGAGTAATGGTTTTGCCTGT 2202927 Query 45317 TAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 | ||| || || || || ||||| ||| || Sbjct 2202928 CAAAGTCTTAACGAAGATCTGCATGCCGCCAC 2202959 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || |||||||| || |||||||| ||||||||||||||| || ||| | || || Sbjct 2202515 ACCAGATGCAGAGTCGATTCCTTCTGGATATTATAATCGGCGAGTGTTCTTCCGTCTTCG 2202574 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| ||| | ||||| || |||||||| || ||||| ||||| || || || Sbjct 2202575 AGTTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCTGGTGGAATTCCTTCCTTGTCCTGG 2202634 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || |||| || | || | || ||||| ||| || || || || | ||| || Sbjct 2202635 ATCTTGGCCTTGA-CGTTGTCGATAGTATCGGAGCTCTCCACCTCTAGCGTTATCGTCTT 2202693 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||| || || || ||||| Sbjct 2202694 TCCGGTCAGGGTTTTCACGAAGATCTGCAT 2202723 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| ||||| | || || || || || ||||||||||||||||| ||||| Sbjct 2202266 ATTCCACCGCGAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTTTGGATATTGTAATCA 2202325 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| ||||| || ||||| ||| | || || || ||||| || || Sbjct 2202326 GCAAGAGTCCTTCCATCCTCCAACTGCTTTCCAGCGAAGATTAACCGCTGCTGATCTGGG 2202385 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || |||||||| || |||| || | || | || ||||| || Sbjct 2202386 GGAATACCTTCCTTGTCTTGAATCTTAGCCTTGA-CGTTGTCAATTGTATCGGAGCTTTC 2202444 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || || ||||| ||||| || || || ||||| Sbjct 2202445 CACCTCCAGCGTTATAGTCTTTCCAGTTAGGGTTTTCACGAATATCTGCAT 2202495 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || || || || || ||||||||||| || Sbjct 1288849 CCACCACGGAGTCGGAGGACAAGGTGAAGAGTGGACTCTTTCTGGATATTATAGTCTGCA 1288790 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| ||| || | |||||| || || | ||||||||||| |||||||| ||| Sbjct 1288789 AGGGTTCGTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGTTGGTCCGGGGGA 1288730 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || || || || ||||| || | || | ||||| || ||| || Sbjct 1288729 ATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATTGTGTCAGAGCTCTCAACC 1288670 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||| ||||| || || || ||||| |||||||| ||||| Sbjct 1288669 TCGAGGGTAATGGTTTTCCCTGTCAGGGTTTTGACAAAAATCTGCAT 1288623 >seq169 Length=810068 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || ||||| || || ||||||||||| ||||| |||||| || ||| ||| || Sbjct 364139 ACAAGATGAAGAGTGGATTCCTTTTGTATATTGTAATCGGCGAGGGTACGGCCATCCTCA 364080 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || ||| | |||| | ||||||||| || ||||| ||||| ||||| ||| Sbjct 364079 AGCTGCTTACCGGCGAAAATCAGCCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGA 364020 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 | | || | | | || | || | |||||||| |||||| |||||||| | ||||| Sbjct 364019 A-TCTTAGCCTTAACGTTGTCGATTGTGTCGGAGCTCTCGACCTCGAGAGTTATAGTTTT 363961 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || ||||| ||||| |||||||| Sbjct 363960 GCCGGTGAGGGTTTTAACAAAGATTTGCAT 363931 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| |||||||||| | || |||||||| || ||||| |||||||| ||||||||| Sbjct 364388 ATTCCACCGCGGAGCCGGAGAACCAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCG 364329 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | || ||||| ||| | ||||| || |||||||| || Sbjct 364328 GCAAGAGTCCGGCCATCCTCTAGCTGCTTTCCGGCGAAAATCAACCGCTGCTGGTCAGGT 364269 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || ||||||||||| ||||| || | || || || || Sbjct 364268 GGAATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTATCAATTGTATCTGAGCTTTCC 364209 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| | || |||||||| ||||| || |||||||| ||||| Sbjct 364208 ACCTCCAAAGTTATAGTCTTGCCGGTGAGAGTCTTCACAAAAATCTGCAT 364159 >seq596 Length=4721113 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || || || || || ||||| || || || || || || ||| | || || Sbjct 1300466 CACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCTGCGAGGGTCCTGCCGTCTTC 1300525 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || |||||||| ||| | || | || ||||||||||| ||||| ||||| || ||||| Sbjct 1300526 CAGCTGTTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTG 1300585 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||| | || | ||| ||||||||||| || ||||| |||| || || Sbjct 1300586 GATCTTGGCTTTCACATTGTCGATGGTATCGGAAGACTCAACCTCGAGGGTAATGGTCTT 1300645 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| ||||| || || || |||||| Sbjct 1300646 ACCCGTTAGGGTTTTCACGAAGATCTGCATC 1300676 >seq271 Length=609135 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | |||||||| || | || || ||||||||||| |||||||| ||||| Sbjct 324064 TTCCTCCTCTAAGCCTCAAAACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCTG 324123 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | ||| || ||| ||||||||||| || || | ||||||| ||| || || || | Sbjct 324124 CAAGAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGATCAGGAG 324183 Query 45232 GAATGCCTTCTTTATC 45247 | || ||||| || || Sbjct 324184 GGATCCCTTCCTTGTC 324199 >seq1476 Length=5289327 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || ||||| | ||| || || || || |||||||| || ||||| |||||| Sbjct 642747 ATTCCACCACGAAGCCTGAGCACAAGGTGGAGAGTGGATTCCTTCTGAATATTGTAATCG 642806 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||| ||| || || ||| | |||| | |||||||| || Sbjct 642807 GCCAAAGTTCGGCCATCTTCCAGTTGCTTACCGGCGAAGATCAGCCTCTGCTGGTCTGGT 642866 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| || || |||||||||||| Sbjct 642867 GGGATGCCCTCCTTGTCTTGAATTTTT 642893 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| ||||| | | ||| || || || || || ||||| || || ||||||||| Sbjct 642975 ATCCCTCCACGGAGACGGAGCACAAGGTGAAGGGTAGACTCCTTCTGAATGTTATAATCG 643034 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||||||||| ||| | |||| | |||||||| || Sbjct 643035 GCCAAGGTACGCCCGTCCTCTAGTTGTTTTCCGGCGAAGATCAGCCTCTGCTGGTCTGGT 643094 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || |||||||||||| || | || | || | |||||| ||| Sbjct 643095 GGGATGCCCTCCTTGTCTTGAATTTTTGCCTTCA-CGTTGTCAATAGTGTCGCTGCTCTC 643153 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || || || || | || || || ||||| |||||| Sbjct 643154 AACCTCGAGGGTGATGGTCTTCCCAGTCAAGGTCTTAACGAAAATCTGCATC 643205 >seq1027 Length=3367805 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | || || || |||||||| |||||||| || || Sbjct 416379 ATGCCACCTCGGAGTCGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCA 416438 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || ||| || | |||||||| || | |||| | |||||||| || Sbjct 416439 GCAAGTGTGCGGCCATCCTCTAGCTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCGGGG 416498 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| ||||| || || || |||| |||| |||||| || ||| Sbjct 416499 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACATTGTCTATGGTGTCAGAGCTCTCC 416558 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || || | || ||||| || || || |||||||| || ||||| Sbjct 416559 ACTTCCAGTGTGATTGTCTTGCCAGTGAGGGTCTTTACAAATATCTGCAT 416608 >seq813 Length=767751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | ||||||| || || || || ||||||||||| || || |||||||| Sbjct 436285 TTCCTCCTCTAAGCCTCAGAACCAGGTGAAGTGTTGATTCCTTCTGAATGTTATAATCAG 436344 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | ||| ||| |||||||| || || || | ||||||| ||||| || || | Sbjct 436345 CAAGAGTTCGGCCATCTTCCAATTGCTTGCCAGCAAAAATCAATCTCTGCTGATCAGGAG 436404 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 | |||||||| ||||| |||| Sbjct 436405 GGATGCCTTCCTTATCCTGAA 436425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451969164159040