Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq6024 693 0.0 seq456 134 2e-26 seq662 96.9 4e-15 seq54 95.1 2e-14 seq169 86.0 8e-12 >seq6024 Length=163856 Score = 693 bits (768), Expect = 0.0 Identities = 748/988 (76%), Gaps = 2/988 (0%) Strand=Plus/Plus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||| ||||||||||| || ||||| |||||||| ||||| Sbjct 526 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 585 Query 7594 ACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGAT 7653 ||||||||| | | || |||||||| || | ||||||||||||| ||||| | Sbjct 586 GTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 645 Query 7654 GGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGT 7713 ||| |||||||| |||||||| || |||||||| ||||| ||||||| ||| | |||||| Sbjct 646 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 705 Query 7714 GAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTT 7773 |||||| || || || || ||||| || || | |||||| || | ||||| || ||||| Sbjct 706 GAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 765 Query 7774 GAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTA 7833 ||| ||| ||||||||||||| || ||||| || || ||||| || ||||| || || Sbjct 766 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 825 Query 7834 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTC 7893 || ||||| ||||||||||| | ||||| | || || ||| || |||||||| Sbjct 826 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 885 Query 7894 ACGAACCAGAGAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAA 7953 | | || | ||||||||| | ||||||||||| |||||||| || ||||| || || Sbjct 886 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 945 Query 7954 GACACCAGCGACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 8013 |||||||| ||||| | |||||| || |||||||| |||||||||||||| || ||||| Sbjct 946 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1005 Query 8014 GACAAGCATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACC 8073 |||| ||| ||||||| ||||||||||| || ||||||||| | ||||| || || Sbjct 1006 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 1065 Query 8074 TTGACCGAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGC 8133 |||||| | ||||||| | ||| ||||||| || || ||||| ||||| || ||||| Sbjct 1066 TTGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 1125 Query 8134 TACACAGATCCAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTA 8193 ||| ||||| || |||||||| |||||| || |||||||||||||||||||||||| Sbjct 1126 AACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1185 Query 8194 TGCATAGATACCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAG 8253 | | ||| | | ||| || | | || || | ||||||| || ||||| | Sbjct 1186 ACAAGCTACACCAAGTAAGAAATGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 1245 Query 8254 CCACTCATCAAGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGA 8313 ||| ||||||| || || |||||||| || || || || || | ||| ||||| ||| Sbjct 1246 CCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGA 1305 Query 8314 AGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGG 8373 || ||||| || |||||||| || || ||||| ||||| | || || |||| || || Sbjct 1306 AGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAGG 1365 Query 8374 TTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAA-ACAAA 8432 |||||| || || ||||| || || ||||| ||||| | |||||||| || || ||| | Sbjct 1366 TTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCGATAATAAATACAGA 1425 Query 8433 TAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGAT 8492 || || | | | ||||| ||||||| ||||| ||||| || | || ||||| | Sbjct 1426 -AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGT 1484 Query 8493 TGTTGGTGGAGGTTACCCAGTTACAGAA 8520 | | ||| ||||| |||||||||||| Sbjct 1485 TTTCAGTGCTGGTTATCCAGTTACAGAA 1512 Score = 563 bits (624), Expect = 1e-155 Identities = 735/1014 (72%), Gaps = 2/1014 (0%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | ||| | || || ||||| |||| || ||||||||| || ||||| Sbjct 38260 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 38201 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | |||||| || || || || || || || ||||| ||| Sbjct 38200 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTAGTGTAGAAAGTC 38141 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 || || || ||||| |||||||| | |||||| || ||||| |||||||| || | || Sbjct 38140 TCAAATTCAGGATCTTCCGCTGCACGGATCTCCTGAGAAACGAAGTCATAGGCACGTAGA 38081 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || || || ||||| | | |||| | |||| | ||| | || || ||||| Sbjct 38080 TTCAGAGCCAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 38021 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | |||||||||||||| |||||| |||||| || || | |||||||| || ||||| Sbjct 38020 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 37961 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 || || ||||| || ||||| ||||| || || || |||| || || | ||| || | Sbjct 37960 AAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 37901 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || ||||||| |||||||||||||| |||||||| |||||||||||||| |||||| Sbjct 37900 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 37841 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 || || |||| || ||||||| | || || || |||||||||||||| ||||| ||| Sbjct 37840 GCGCATAGCAGAGCAGCACCTAATACGCCGGCAACCCCCATCATATGAAATGGGTTCAGC 37781 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 |||||||| || || || || | ||||| | ||| || ||||| ||||| |||||||| Sbjct 37780 GTCCAGTTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACACCAAAA 37721 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 |||||||| ||||||| ||||| || || ||||| || || || ||||| ||||| Sbjct 37720 CTAGGCGCAAAAAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAA 37661 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACG-AATACCGACTAGACGTGC 6921 |||||||| |||||||| || ||||||||||| || || || ||| | || || || Sbjct 37660 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGC-ACGGATCGAGC 37602 Query 6922 GATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAA 6981 | ||||| || || | ||| |||||||| || | || || |||||||| || ||||| Sbjct 37601 AAGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCACCGTGGAGAGCAACAAA 37542 Query 6982 AGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCA 7041 || ||| | || || | ||| ||| || ||||| || || ||||| |||||||| Sbjct 37541 AGTCCACAAACCGCCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCGGGACCCCA 37482 Query 7042 TAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 ||| | | | ||||| | | | | ||||||||| || || ||||| || | ||| Sbjct 37481 TAGTAATAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAGAA 37422 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 || || || || | ||| ||| ||| | || || || ||||| || || || || Sbjct 37421 GTTGCAGCCTTCCAAATAGGAACTAGCCAATCCATGGGTATACCATGAGGTTACAAAGGT 37362 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || |||| |||||| || | || | || || ||| || || | ||||| || Sbjct 37361 TGTACCTGTGAACCAACCCCCTAAGGCGAAATAGGCGCAAGGAAAGAGCAATAGACCGGA 37302 Query 7222 CCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 |||||| ||||||||||| | || | | | ||||||||| | | |||||| Sbjct 37301 CCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 37248 >seq456 Length=400266 Score = 134 bits (148), Expect = 2e-26 Identities = 319/473 (67%), Gaps = 12/473 (3%) Strand=Plus/Plus Query 6356 AATAGGATGTTCTTGGTATAGAACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCT 6415 || || || || || || ||||| |||| ||| || |||| ||| || | ||| ||| Sbjct 320620 AAGAGAATATTTTTAGTGTAGAAAGTCT-GAATTCAGGATTTTCCTCTTATA-GATTTCT 320677 Query 6416 TGTGAAACAAAGTCATAAGCTCTAAGGTT--AAGTGCAAGACCAATAATACCAATGCTAG 6473 || ||| |||||||||| || | || || |||| ||| | | || | | || | Sbjct 320678 TGAGAAGCAAAGTCATAGGCACATAGATTGAAAGT-CAAATCGACTATTCTAAGAGC-AC 320735 Query 6474 AGGTCCAAAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGC 6533 || | | | | || || || | | | | ||||||||||| || |||| ||||| Sbjct 320736 TCATCTATAAATCGATTACTGGTATAGATAACATAAAGAAATATAATCAACATTTATTAG 320795 Query 6534 TGAAGGCGATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCT 6593 || || || |||||||| |||||||| || | || || ||||| | ||||| || | Sbjct 320796 AAAAAGCAAT-CCAAAGATTTGAGACCAAAAGTGGTTGGCAGTGACGACTGAATAAGTTT 320854 Query 6594 CCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACA 6653 | || ||| || || | ||| | | ||||| ||| |||||||||||| | | Sbjct 320855 CTTCAGATTGAGTTGGTTTAAAGGTATGCAAAGTGTTTACACCATCACCATCTTCAGATA 320914 Query 6654 AAGTATTCTCTACAGTAGCACCGTGAATA--GCA---CAGAGCAATGCTCCACCTAAGAT 6708 |||| || |||||| || ||| |||||| ||| ||||||| ||| | | || || Sbjct 320915 AAGTCTTTTCTACAATAACACTATGAATAGTGCATAGCAGAGCAGTGCCCAATACAATAT 320974 Query 6709 ACCTGCTACACCCATCATATGAAACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAA 6768 || || || ||| |||||||||| ||||| | | || |||| | || | || | || Sbjct 320975 GCCGGCAACTCCCGTCATATGAAATGGGTTCAACATCTAGTTATAAAACTCTTGGAAAAA 321034 Query 6769 GAGTAAGAAGCGGAATATCGCTGCAACACCAAACGACGGCGCAAAGAACCAAC 6821 || | ||| || ||||| | ||| |||| ||| || || ||| || |||| Sbjct 321035 GAAGATGAATCGAAATATAGTTGCTACACAAAAGGAAAGCATAAAAAATCAAC 321087 >seq662 Length=431101 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 10203 TCAGTAAAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAAC 10262 |||| | |||||| | || ||| | | || ||||||||| || || || ||||| Sbjct 315313 TCAGCACAGTTCAGCTTCCCTGTGGGTGTGAATCACACAATCTGAAGTTGGGTATGAAAC 315254 Query 10263 ACAGGTCAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTG 10322 ||| ||||| | |||| | | || || | ||||| |||||||| ||| || Sbjct 315253 ACAAGTCAGCAAATAACCGTCTTTCATTTGATTCTCATCCAGGAACGAACCATCAGACTG 315194 Query 10323 ATCTACCGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGA 10382 |||||||| ||| || | | || || |||||| | || || || ||||| | ||| || Sbjct 315193 ATCTACCGAACCTGACACCATCTTCCCAGCACAAGTAGAGCAAGCCCCAGCCCTGCAAGA 315134 Query 10383 GTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTACTGATCGTCAG 10438 ||| || |||| || ||||| ||||||||||| || ||||| ||| |||| Sbjct 315133 ATAGGGAAGCTCAACTCCAGCTTCCTCAGCAGCATCTAGGATGTATGTATCATCAG 315078 >seq54 Length=3626826 Score = 95.1 bits (104), Expect = 2e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 7658 TGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAAC 7717 |||||||| ||||||||||| |||||||| ||||| ||||||||||| | |||||||||| Sbjct 2788148 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTAACACCTAAAGCAGTGAAC 2788089 Query 7718 CAGATGCCAACAACTGG 7734 || || || ||||| || Sbjct 2788088 CAAATACCTACAACGGG 2788072 >seq169 Length=810068 Score = 86.0 bits (94), Expect = 8e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 10209 AAGTTCATCCTCTTTGTCAATCTCAACCACACAATCGCTCGTGGGATAAGAAACACAGGT 10268 ||| || || || |||| |||||| ||| ||| |||||||||| |||||| || Sbjct 97216 AAGATCTTCTTCCTTGTGTGTCTCAATGACAACATCAGAAGTGGGATAAGCAACACAAGT 97275 Query 10269 CAGAAGGAAACCAGCATCGATCTGGTCATCATCAAGGAACGATTGATCGCTTTGATCTAC 10328 |||| | || | || || || ||||||||||| || |||| ||||| || Sbjct 97276 AAGAACCCAGCCCTCTTCCATTTGTTCATCATCAAGAAAACTACCATCGGACTGATCAAC 97335 Query 10329 CGTACCCGAGATGAGTTTGCCTGCACAACTCGAACAGGCACCAGCTCGGCACGAGTAGTT 10388 | || | | ||| ||||||||| || || | ||| || | || ||||| Sbjct 97336 CTCTCCTCCTACAACTTTCCCTGCACAAGAAGAGCAAGAACCTGCCCTACATGAGTATGG 97395 Query 10389 GAGGTCAATGCCTGCTTCTTCAGCAGCATCCAGAATGTAC 10428 | ||||| |||||||||||||| ||||||||||||||| Sbjct 97396 CAAGTCAACTCCTGCTTCTTCAGCTGCATCCAGAATGTAC 97435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622077954002560