Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq33 95.1 1e-14 >seq33 Length=1871104 Score = 95.1 bits (104), Expect = 1e-14 Identities = 178/261 (68%), Gaps = 3/261 (1%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| | ||||||||| || ||||| | || || ||||| | || ||||| | || Sbjct 634304 GTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGTTAATCCCGGCATCAACCC 634363 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||| || | ||| || || || ||||| |||||||| || ||||||||||| || Sbjct 634364 GCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAAAAATATCCCCTCCACGCA 634423 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 127710 || || || | || | ||| || || || || | || | ||| ||| || Sbjct 634424 TGCAAAAGCGACAAGTCTCTCAGCGAAAGACTCCGA---TCCGTCGATCCATCTCAAGGC 634480 Query 127711 CCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 127770 ||||| |||||||| | | ||| || ||||||| |||||| | ||| | | ||||| Sbjct 634481 CCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCGTGAAATAATCGATTCTT 634540 Query 127771 TTCTGATGGATCTTTGATGTA 127791 || | | ||||||||| || Sbjct 634541 CTCGGTCGAATCTTTGATATA 634561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613461002907840