Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq33 147 3e-30 >seq33 Length=1871104 Score = 147 bits (162), Expect = 3e-30 Identities = 489/750 (65%), Gaps = 37/750 (5%) Strand=Plus/Plus Query 159744 CCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCA 159803 ||| |||||| || |||||||| || || || | |||| |||| | ||| ||||| | Sbjct 634114 CCAACAACCTATCAGCCACAAACTCAATATACTGGCTCATCAGCTCTCGGTTCATCCCTA 634173 Query 159804 GCA--GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGT 159861 || || || || ||||| || | | ||||||| ||||||| || || || || Sbjct 634174 CCAAAGCGCAA--GGAAGCGCGTCGCATACAAACTCCCTCTCAATTTCCACTGCATCACG 634231 Query 159862 CACAATCTGCGAGACACGTTCGT------ACCCCGGCTTGCCCAAAATGTGGTCCTTAAA 159915 ||| || | ||||| || | || | ||| |||| ||| | Sbjct 634232 CACTATTCCCTTCACACGCTCCTCATTCAACTTCTTCTTCAACAAACTGTAG-------- 634283 Query 159916 CAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACAT 159975 || | |||||| || |||||||||| |||||||| || ||||| |||||||| || | Sbjct 634284 -AGCAAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAA 634342 Query 159976 GATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCT 160035 | | |||||||| | ||| ||| ||| |||||||| ||||| |||||| | | Sbjct 634343 AGTTAATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGGC-GCAAAAACTTCCAG 634401 Query 160036 A-AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGG 160094 | ||||| |||||||||||| ||||| || || || |||||| | ||||| | | Sbjct 634402 AGAAAAATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAAGA---CTCCG 634458 Query 160095 TGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGA 160154 | | | |||| || |||||| |||||||| || || | || || | | ||||| Sbjct 634459 ATCCGTCGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGA 634518 Query 160155 CGGCGTTAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGT-AGCAATCAGCTTC 160213 |||| ||| |||| | || ||| || ||| ||||| ||| || | | | Sbjct 634519 TCGCGTGAAATAATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGAC 634578 Query 160214 GAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCC 160273 | ||||| || | ||| | ||| || || || || |||||| |||||| ||| Sbjct 634579 TA-TACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCC 634637 Query 160274 TCCAGATAC-TGCACCTCCTGTGTGAACCTTTGAC---CCAGATTGGCATTAACCAACCC 160329 | |||| || || ||||||| | || | ||| | ||||| | ||| | || Sbjct 634638 T-CAGAGACTTGGACCTCCTTCATAAAAC---GACCGGCAAGATTTTCGAGAACGATGCC 634693 Query 160330 GTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAG 160389 || | ||| |||||||| || | || ||||| ||||| ||| |||| || | | || Sbjct 634694 ATCAGAGGCGGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAG 634753 Query 160390 TCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGC 160449 | ||||| || | ||||| | | ||| ||||| || || ||||| || Sbjct 634754 GGCC---TCCCATTGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGA 634810 Query 160450 AGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 |||| || | |||||||| |||| || Sbjct 634811 GGCCTCGGCTTTCTTGTACATTTCCCATAT 634840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795095324813440