Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq169 111 1e-19 seq167 89.7 4e-13 seq1476 87.8 1e-12 >seq169 Length=810068 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || |||| ||||| |||| ||||||||| || ||||||||||| | | || || Sbjct 364373 CGGAGAACCAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCGGCAAGAGTCCGGCCA 364314 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | || || ||| | ||||| || |||||||| || | || | ||||| ||| Sbjct 364313 TCCTCTAGCTGCTTTCCGGCGAAAATCAACCGCTGCTGGTCAGGTGGAATACCTTCCTTG 364254 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | | | | ||| |||| ||||||||| |||||||| || Sbjct 364253 TCTTGAATTTTGGCTTTGACATTATCAATTGTATCTGAGCTTTCCACCTCCAAAGTTATA 364194 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || || | ||| || || || ||||||||| Sbjct 364193 GTCTTGCCGGTGAGAGTCTTCACAAAAATCTGCATG 364158 >seq167 Length=3484751 Score = 89.7 bits (98), Expect = 4e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| ||||| ||||| ||||| || | | | | |||| ||||| || || || | || Sbjct 2202304 TTCCTTTTGGATATTGTAATCAGCAAGAGTCCTTCCATCCTCCAACTGCTTTCCAGCGAA 2202363 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 ||||| ||||||||||| | ||| | ||||| ||||| || || || | ||| Sbjct 2202364 GATTAACCGCTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTAGCCTTGA-CGT 2202422 Query 39648 CG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 | | | ||| || | ||||||||| |||| || || || || || |||| ||||| | Sbjct 2202423 TGTCAATTGTATCGGAGCTTTCCACCTCCAGCGTTATAGTCTTTCCAGTTAGGGTTTTCA 2202482 Query 39707 CGAAGATCTGCAT 39719 |||| |||||||| Sbjct 2202483 CGAATATCTGCAT 2202495 >seq1476 Length=5289327 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||| |||||||||||| || |||| || | ||||||||| |||| Sbjct 643470 TCCTTCTGGATATTGTAATCGGCCAAAGTACGGCCATCTTCGAGCTGTTTCCCGGCAAAG 643529 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||||||| || | || | ||||||||||| ||||| ||| | ||| Sbjct 643530 ATAAGACGCTGCTGGTCTGGCGGGATACCTTCTTTGTCTTGGATTTTGGCTTTGA-CGTT 643588 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| ||| || || || | ||| || || || || || | || || || Sbjct 643589 GTCGATGGTGTCGCTGCTCTCTACCTCGAGAGTGATAGTCTTGCCGGTGAGGGTCTTAAC 643648 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 643649 GAAGATCTGCAT 643660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347344096992392