Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq700 161 1e-34 seq234 82.4 9e-11 >seq700 Length=103685 Score = 161 bits (178), Expect = 1e-34 Identities = 319/465 (69%), Gaps = 18/465 (4%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 ||| || || || | | ||| ||||| || ||||| | |||||| || |||| || Sbjct 7682 ATCCAGAATGTCTGCCCTATTGGTTGCTGCAATGACGATAATACCAGT---GTTACCCTC 7626 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| ||||||||||||||||||| || ||||| | ||||||||| || Sbjct 7625 AAAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT-- 7568 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| |||| | | |||| |||| || |||||||| ||||| | || || || Sbjct 7567 -CCACCAATGCCAGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCTACAAATACAAT 7509 Query 16091 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 ||| || ||||| | || |||| || ||||| || || | ||| || ||| Sbjct 7508 GCAGGGAGCATTTT--CTTTCGCCTTCTTGAACAGATCACGAACTCTAGAGGCACCAACA 7451 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 |||||||||||||| ||||| | | | | | || | || || || ||| || ||| Sbjct 7450 CCAACAAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCAGCTTC 7392 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| |||||||| ||| ||||| ||||| || || ||||| ||| | || || | Sbjct 7391 ACCAGCAATGGCCTTGGCTAGAAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAAC 7332 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 |||| |||||| || ||| || | ||||||| || | ||| ||||| || || Sbjct 7331 ACCTTTTGGAATGCGAGCCCCAACGGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAAC 7272 Query 16328 AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | ||| || || | ||| || | |||| || ||||||| Sbjct 7271 TACCTCCATGAAATCCTGTTTTGCTTCATCAACTCCAGCAACATC 7227 >seq234 Length=1393318 Score = 82.4 bits (90), Expect = 9e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||| | ||| |||||||| || || | |||||||| | Sbjct 704053 AAATCCATCCATTTCAGTCAACAACTGATTAATAGTCTGCTCTCTCTCATCATTTCCACC 704112 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | |||||| | | || |||| |||||||||||||||||||| || || ||||| Sbjct 704113 TCCAAGACCAGCTCCTCTCTGTCTTCCTACGGCATCAATCTCATCAATAAATACAATGCA 704172 Query 16094 TGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCCACACCA 16151 || ||| | || ||||| | ||| | || |||| || ||||| || Sbjct 704173 AGGAGCCTTTGCTTTGGCTTTCTCAAACAAATCTC--TGACTCTTGATGCTCCCACTCCC 704230 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 ||||||| ||||||||| | || || | |||| Sbjct 704231 ACAAACAACTCCACAAACTCTGAAGCTGCACAT 704263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620695658097280