Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq700 165 1e-35 seq234 96.9 4e-15 >seq700 Length=103685 Score = 165 bits (182), Expect = 1e-35 Identities = 315/460 (68%), Gaps = 8/460 (2%) Strand=Plus/Minus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 ||| || || || | | ||| || || || ||||| | |||||| || | | ||||| Sbjct 7682 ATCCAGAATGTCTGCCCTATTGGTTGCTGCAATGACGATAATACCAGTGTTACCCTCAAA 7623 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || Sbjct 7622 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT---CC 7566 Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 |||| |||| | | |||| |||| || |||||||| ||||| | || ||||| || Sbjct 7565 ACCAATGCCAGTGCCTCTTTGCCTTCCAACAGCATCAATTTCATCTACAAATACAATGCA 7506 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || |||||| || | | || ||||| ||||| || ||| || |||||||| Sbjct 7505 GGGAGCATTTTCTTTCGCCTTCTTGAACAGATCACGAACTCTAGAGGCACCAACACCAAC 7446 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | | | || | || || || ||| || |||||| | Sbjct 7445 AAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCAGCTTCACCAG 7387 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCC 9579 ||||||| ||| ||||| ||||| || || ||||| ||| | || || |||| Sbjct 7386 CAATGGCCTTGGCTAGAAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACACCTT 7327 Query 9580 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCT 9639 |||||| || ||| || | ||||||| || | ||||||||| || || | || Sbjct 7326 TTGGAATGCGAGCCCCAACGGCAGTGAATCTCTCTGGCTTCTTGAGAAACTCAACTACCT 7267 Query 9640 CTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 | || || | ||| || | |||| || ||||||| Sbjct 7266 CCATGAAATCCTGTTTTGCTTCATCAACTCCAGCAACATC 7227 >seq234 Length=1393318 Score = 96.9 bits (106), Expect = 4e-15 Identities = 182/268 (68%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| | |||| | ||| || || || | || | || ||||| | | | ||| Sbjct 703996 ATCAAGAACATCAGGTCTATTAGTGGCAGCCAACACTATAACACCTGAATTACCAGAAAA 704055 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 |||||||| || ||||| | || |||||||| || || | |||||||| | Sbjct 704056 TCCATCCATTTCAGTCAACAACTGATTAATAGTCTGCTCTCTCTCATCATTTCCACCTCC 704115 Query 9344 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403 | |||||| | | || |||| |||||||||||||||||||| || ||||| || || Sbjct 704116 AAGACCAGCTCCTCTCTGTCTTCCTACGGCATCAATCTCATCAATAAATACAATGCAAGG 704175 Query 9404 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463 ||| | ||| | ||||| | ||| | || ||| || ||||| || ||||| Sbjct 704176 AGCCTTTGCTTTGGCTTTCTCAAACAAATCTCTGACTCTTGATGCTCCCACTCCCACAAA 704235 Query 9464 CATCTCCACAAAGTTTGCGGCGGAACAT 9491 || ||||||||| | || || | |||| Sbjct 704236 CAACTCCACAAACTCTGAAGCTGCACAT 704263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589936374445760