Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq6024 610 8e-170 seq456 138 1e-27 seq214 93.3 5e-14 seq662 82.4 9e-11 seq169 82.4 9e-11 >seq6024 Length=163856 Score = 610 bits (676), Expect = 8e-170 Identities = 732/989 (74%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 ||||| | ||| ||||| || | ||||| || || | || ||||| || ||| || Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || ||| | ||| | |||||| |||| || || |||| ||||| ||||| || Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACC 1394 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 || || || || ||||| || |||||||| || |||| || || | ||||| ||||| Sbjct 1393 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 1334 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 179986 || || |||||||| || ||||| |||| || || ||| | || || || || || Sbjct 1333 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 1274 Query 179987 CTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGT 180046 |||||||| ||||| |||| || ||| | || || || ||||||| | || | || Sbjct 1273 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1214 Query 180047 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCG 180106 | || ||| | |||| | | |||||||||||||||||||||||| || || Sbjct 1213 TCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1154 Query 180107 CTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 180165 ||||||||||||| ||||| ||| || |||||||| ||||| || || || || ||| Sbjct 1153 TCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1095 Query 180166 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCA 180225 |||| ||| | ||||||| | |||||||| || ||||| | ||||| || || | Sbjct 1094 CTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 1035 Query 180226 TTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCACC 180285 | ||||| || ||||||| ||| |||| ||||| || |||||||||||||| ||||||| Sbjct 1034 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 975 Query 180286 CCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACG 180345 | || |||||| | || ||||| ||||| ||||||||||| || ||| || ||||| | Sbjct 974 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 915 Query 180346 GTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACG 180405 |||| |||| |||||| || | | |||||||| |||| ||| || || | | Sbjct 914 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 855 Query 180406 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCG 180465 |||||| || |||||||| ||||| || || || ||||| || || ||||| || || | Sbjct 854 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 795 Query 180466 GTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGG 180525 | || |||||||||| ||||| |||||||| || ||||| | || |||||| | | Sbjct 794 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 735 Query 180526 CAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 180585 | || |||||||| || || || ||||||||||| | || | ||||| ||||| |||| Sbjct 734 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 675 Query 180586 ACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACA 180645 |||| || |||||||| |||||||| ||| | ||||| ||||||||||||| | || | Sbjct 674 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATA 615 Query 180646 CTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATG 180705 | ||||| || | | ||||| ||| || ||||||||||||||||| || ||||||| Sbjct 614 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 555 Query 180706 CTCACAACTTCCCACTTGACCTGGCAGCT 180734 |||| |||||||| || ||||| || ||| Sbjct 554 CTCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 551 bits (610), Expect = 7e-152 Identities = 735/1018 (72%), Gaps = 10/1018 (1%) Strand=Plus/Plus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | ||||| || || ||||| || ||||| || Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| || ||| | || | ||||| ||| |||| || || || ||| Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGG-TGCTAATTTCCT 181602 || || || ||||| ||||| |||||||| |||||| | || || ||| || ||| | Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AACTTCTT 37426 Query 181603 TACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 181662 || || || || || || |||||| | | | | |||||| | | |||| ||||| Sbjct 37427 AACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGG 37486 Query 181663 TCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGT 181722 ||| ||||| || || ||||| || ||| ||| | || || | ||| ||||||| Sbjct 37487 TCCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGT 37546 Query 181723 GGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG 181782 || |||||||| || |||| || || ||||||||| | | ||||||||||||||||| Sbjct 37547 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 37606 Query 181783 TCTAATCGG----AATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTAT 181838 ||| | | | ||||| || ||||| || || || || ||||| |||||||| | Sbjct 37607 ----ATCCGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTT 37662 Query 181839 TCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTT 181898 | || |||||||| || || ||||| || || || || ||||||| |||||||| |||| Sbjct 37663 TTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTT 37722 Query 181899 TCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGC 181958 | ||||| || || || || || ||| | ||||| |||| || |||||||| ||||||| Sbjct 37723 TTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGC 37782 Query 181959 TCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAA 182018 | || || || ||||||||||| ||||| || | | |||| || | || | || | Sbjct 37783 TGAACCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTA 37842 Query 182019 TTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCA 182078 |||| |||| || || || |||||| | | | |||| ||||| |||||||| ||| Sbjct 37843 TTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCC 37902 Query 182079 AAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCT 182138 || || | ||||||||| |||||||| |||||||||||||| || |||||||| | Sbjct 37903 GTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTT 37962 Query 182139 GGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCT 182198 |||| || ||||| || |||| ||| |||||| | ||||| |||||||||||| | | Sbjct 37963 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 38022 Query 182199 TTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACC 182258 |||| || || | ||| | |||| ||| | | || | | ||||| ||||| || | Sbjct 38023 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATC 38082 Query 182259 TTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGA 182318 | ||||| |||||||| || || || || ||| | ||| | ||||| || || || |||| Sbjct 38083 TACGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGA 38142 Query 182319 CGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCG 182378 | |||||||| || || |||||||| || |||||| | ||||| ||| | || | | Sbjct 38143 CTTTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 38202 Query 182379 ATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 |||| || ||||| ||| || | ||||||||||| || |||| | || ||||| || Sbjct 38203 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 38260 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 116328 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 116269 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 116268 CCTACTTGGGGAG 116256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||||||||| ||| Sbjct 139260 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCGAAT 139319 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 139320 CCTACTTGGGGAG 139332 >seq456 Length=400266 Score = 138 bits (152), Expect = 1e-27 Identities = 304/451 (67%), Gaps = 16/451 (4%) Strand=Plus/Minus Query 181902 GTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 181961 |||| || | || || || ||| | |||| |||| | ||| |||| | || | | | Sbjct 321063 GTGTAGCAACTATATTTCGATTCATCTTCTTTTTCCAAGAGTTTTATAACTAGATGTTGA 321004 Query 181962 ATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTC---TGCA- 182017 | || || ||||||| ||| ||||| || || || | | ||| | |||| |||| Sbjct 321003 ACCCATTTCATATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTGCTATGCAC 320944 Query 182018 -ATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTT 182076 ||||| |||| | || || || ||| | | | |||| ||||| | ||| ||||| Sbjct 320943 TATTCATAGTGTTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGTAAACACTTT 320884 Query 182077 CAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTT 182136 | | || | |||||||| |||||||| |||||| | || || || |||| ||| Sbjct 320883 GCATACCTTTAAACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCCAACCACTT 320824 Query 182137 CTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCT 182196 |||||||| ||||| || ||||| ||| ||||| | || || ||||||||||| | Sbjct 320823 TTGGTCTCAAATCTTTGG-ATTGCTTTTTCTAATAAATGTTGATTATATTTCTTTATGTT 320765 Query 182197 CTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAA 182256 | | | || || || | | | | || ||| | | | || | | | | || |||| Sbjct 320764 ATCTATACCAGTAATCGATTTATAGATGAGTGCTCTTAGAATAGTCGATTTGACTTTCAA 320705 Query 182257 CCTTCGTGCTTATGACTTTGTATCCCAAGAAATC----AGAGCATCAGAAGACCCAGAGT 182312 || |||| |||||||||| || ||||||||| |||| ||| | || || | Sbjct 320704 TCTATGTGCCTATGACTTTGCTTCTCAAGAAATCTATAAGAG-----GAAAATCCTGAAT 320650 Query 182313 TCGAGACGTTCTACACAAAGAACATTCTCTT 182343 || |||| |||||||| || || |||||||| Sbjct 320649 TC-AGACTTTCTACACTAAAAATATTCTCTT 320620 >seq214 Length=442246 Score = 93.3 bits (102), Expect = 5e-14 Identities = 105/139 (76%), Gaps = 5/139 (4%) Strand=Plus/Plus Query 181848 TATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCG 181907 |||| || || ||||||||||| || || ||||||| |||||||| ||||| ||||| | Sbjct 75045 TATTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCC-AGTTTTGGTGTAG 75103 Query 181908 CGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCT 181967 | || || || || ||| | ||||| |||| || ||| |||| | ||| || || | Sbjct 75104 CAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACT----GCTGAACCCAT 75159 Query 181968 TCCATATGATGGGTGTTGC 181986 | ||||| ||||| ||||| Sbjct 75160 TTCATATCATGGGGGTTGC 75178 >seq662 Length=431101 Score = 82.4 bits (90), Expect = 9e-11 Identities = 129/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || || ||||| || ||||| || ||||| ||| ||||| ||| | || || || || Sbjct 315095 CTAGATGCTGCTGAGGAAGCTGGAGTTGAGCTTCCCTATTCTTGCAGGGCTGGGGCTTGC 315154 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || | |||||||| || | | | ||| ||||||||||||| || || ||||| Sbjct 315155 TCTACTTGTGCTGGGAAGATGGTGTCAGGTTCGGTAGATCAGTCTGATGGTTCGTTCCTG 315214 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCGAT 172088 ||||| |||||||| | | || | | ||||| |||||| | || || || ||| Sbjct 315215 GATGAGAATCAAATGAAAGACGGTTATTTGCTGACTTGTGTTTCATACCCAACTTCAGAT 315274 Query 172089 TGTGT 172093 ||||| Sbjct 315275 TGTGT 315279 >seq169 Length=810068 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/175 (70%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 171907 TTCTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCT 171966 ||||||| || || || ||||| || ||||| ||||| || || | || ||| | | Sbjct 97430 TTCTGGATGCAGCTGAAGAAGCAGGAGTTGACTTGCCATACTCATGTAGGGCAGGTTCTT 97371 Query 171967 GTTCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCC 172026 | || ||||| || ||| ||| | || ||| |||||||| || ||| | Sbjct 97370 GCTCTTCTTGTGCAGGGAAAGTTGTAGGAGGAGAGGTTGATCAGTCCGATGGTAGTTTTC 97311 Query 172027 TTGATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||||| |||||||| | || | ||||| || |||||||||||||| || Sbjct 97310 TTGATGATGAACAAATGGAAGAGGGCTGGGTTCTTACTTGTGTTGCTTATCCCAC 97256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610350837120960