Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq6024 517 1e-141 seq353 113 5e-20 seq135 96.9 4e-15 >seq6024 Length=163856 Score = 517 bits (572), Expect = 1e-141 Identities = 686/946 (73%), Gaps = 6/946 (1%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TTCATC 169500 |||| |||||||||||| | ||||| || ||| | || ||| | | ||| || || Sbjct 1472 TTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATT 1414 Query 169501 GTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGT 169560 | || |||||||| |||||||| || ||||| || || || | ||||| || | || Sbjct 1413 ATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGG 1354 Query 169561 TCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 ||| | | ||||| ||||| || || |||||||| || |||| | || ||||| Sbjct 1353 TCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATA 1294 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | || || |||||||| |||||||| ||| | |||||||||||||| || ||||| Sbjct 1293 GGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGC 1234 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCAC-TTCCTTA-TTGGTATCTCAGCATACATGGGAA 169738 ||||||||| || | | | ||| || || |||| ||||| | | |||||||| Sbjct 1233 GGTCCTTATGAGCTAAT--TGTTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTC 1176 Query 169739 GACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTG 169798 | |||||||||| | | | | || ||||| |||||||| ||||||||| || | Sbjct 1175 GTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAG 1116 Query 169799 CACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCT 169858 | || || | ||||| ||||| ||||| | || ||| ||||||| || || | Sbjct 1115 CTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTT 1056 Query 169859 CTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAG 169918 ||||||||||||| ||||| ||||| |||||||||||||||||| | || ||||| || | Sbjct 1055 CTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTG 996 Query 169919 AGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGAT 169978 |||| ||||| || ||||| || || |||||| ||| ||||| || | ||||| || | Sbjct 995 AGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTT 936 Query 169979 CTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAG 170038 | ||||| || ||||||||||| | || || || | | ||||| ||||| |||| Sbjct 935 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAG 876 Query 170039 AGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAG 170098 | | || || || | ||||| | ||||| ||||| |||||||| || || || | Sbjct 875 AAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCG 816 Query 170099 TAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAA 170158 |||| || || ||||| ||||| || | |||||||| |||||| |||||||| || Sbjct 815 TAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTC 756 Query 170159 GAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGG 170218 | | |||| |||||| |||| | || ||||| ||| || | ||||| || || | | Sbjct 755 GTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAG 696 Query 170219 GTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTTGATG 170278 |||| |||| ||||| |||||| | ||||||||||| || |||||||| || |||||| Sbjct 695 GTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATA 636 Query 170279 CTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGTATGG 170338 | | || | | || |||| |||| || | ||| | || ||| | ||||||| Sbjct 635 GTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGG 576 Query 170339 AAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 |||||||||||||| | ||||| || |||||||| ||||||||||| Sbjct 575 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 530 Score = 401 bits (444), Expect = 7e-107 Identities = 713/1040 (69%), Gaps = 25/1040 (2%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| || ||||| || || |||| ||||| ||| Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | ||||| || || | | | || ||||||||| ||| || ||||| Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | ||| || ||| | || || || |||||| || Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAACTTCTTA 37427 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || |||||||| || |||| | | | ||| | | | || || ||||| Sbjct 37428 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGT 37487 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 || ||||||||||| ||| |||||||| ||| | || ||||| |||| ||||| Sbjct 37488 CCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTT 37547 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || | || || | || ||||| |||||||| ||| | | |||||||| | || || Sbjct 37548 GCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 37607 Query 170889 CTTGTAGGCA--TCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCA 170946 || ||| | ||||||| || ||| |||||||||||| | || || || || Sbjct 37608 TCCGT--GCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 37665 Query 170947 CTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCG 171006 | | || ||||| ||||||||||||||| ||||||| || || || || | Sbjct 37666 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTG 37725 Query 171007 GTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGA 171066 |||| ||||| || ||||| | ||| | || | ||||| || || ||| || ||| Sbjct 37726 GTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGA 37785 Query 171067 ATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTC 171126 | |||||||| |||||||| ||||| || || |||||| || | |||| || |||| Sbjct 37786 ACCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTC 37845 Query 171127 ATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAA 171186 ||||||| || || | || || || | ||||| || |||| Sbjct 37846 ATGGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGAT-----GG 37888 Query 171187 TTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGA 171246 | |||| ||||||||||| ||| | || || || | ||||||||||| ||| Sbjct 37889 TGCAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGG 37944 Query 171247 TTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTT 171306 |||| || ||| | || ||||| || || ||||| ||||||| || || ||| | | | Sbjct 37945 TTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGT 38004 Query 171307 TACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCG 171366 |||| ||| ||||||| || || || || | ||| | |||| || | || | | Sbjct 38005 TACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAG 38064 Query 171367 TAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAG 171426 | ||||| || || || || | || || || || || ||||| ||||| | ||||| | Sbjct 38065 TCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGG 38124 Query 171427 AAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAG 171486 |||| || || || ||||||||||||||||| ||||| || | || |||||||| | | Sbjct 38125 AAGATCCTGAATTTGAGACTTTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTG 38184 Query 171487 CATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTAC 171546 | |||||| | | || || || ||||| ||| | ||||||| || || || ||| Sbjct 38185 CTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 38244 Query 171547 CAAGAGGTAACGCACTTTAA 171566 || | || ||||| |||||| Sbjct 38245 CACGTGGAAACGCTCTTTAA 38264 >seq353 Length=5262178 Score = 113 bits (124), Expect = 5e-20 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 || ||||| |||||| ||| || || || |||||||||||||| ||||| || ||| Sbjct 4174125 GAAAATCCAGCTTGGTATACACAGTATACGCCTTATCAAGCTGAGATTTCTCAAGGGAGA 4174184 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 |||||| |||| | |||||||| || | || || || ||||| ||||| || || || Sbjct 4174185 TTGGAATCTTTGCTTAATTACCAGACTATGATTACTGATCTTACTGGATTGCCTATGTCA 4174244 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTAT-TAGCATATA 153441 || || || | | ||||||| ||| || || || || ||||| ||||| | ||| Sbjct 4174245 AATGCTTCATTGCTTGATGAAGGAACAGCTGCTGCTGAGGCAATGGCTATGTGTAATAAT 4174304 Query 153442 ATTCTACAA-GAGATAAGAAGACTGTCATAGTTGATAA 153478 |||||| || || | || |||||| | || ||| ||| Sbjct 4174305 ATTCTAAAAGGAAAGAAAAAGACTTTTATTATTGCTAA 4174342 Score = 82.4 bits (90), Expect = 9e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 154879 TTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCG 154938 ||||||| || || || ||||| || | |||| ||| ||||||||||||| Sbjct 4176985 TTACATATCCTTCCACTCATGGAGTCTATGAAGAAGGTATTGATGAGATATGTAAGATAA 4177044 Query 154939 TTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGT 154993 ||||||||||||| ||||| ||||| | |||||||| || | ||||||||||| Sbjct 4177045 TTCATGACAATGGAGGTCAAGTATACATGGATGGAGCTAACATGAATGCACAGGT 4177099 >seq135 Length=947859 Score = 96.9 bits (106), Expect = 4e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 169855 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAA 169914 || |||||||||||||| |||| ||||| ||||||||||||||||| | || |||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 169915 GCAGAGCATAACATTCTAATGCATCCTTTCCACATG 169950 || ||||| ||||| || ||||| || || ||||| Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATTTTACATG 378216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579169185276160