Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq6024 657 0.0 seq456 156 5e-33 seq214 98.7 1e-15 seq318 89.7 6e-13 seq823 87.8 2e-12 >seq6024 Length=163856 Score = 657 bits (728), Expect = 0.0 Identities = 724/961 (75%), Gaps = 2/961 (0%) Strand=Plus/Minus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTGCAGCAACC 163871 ||||| || || |||| ||||| || ||| ||||||||||||| | | | ||||| Sbjct 1485 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1426 Query 163872 ATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGA 163930 ||||| || || |||| ||| | ||||| || || || || || |||||||||||||| Sbjct 1425 -TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 1367 Query 163931 ACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 163990 ||||||| | || || || | ||||| ||||| || || |||||||| || |||| | Sbjct 1366 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1307 Query 163991 GTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATG 164050 || || || ||| | || || ||||| || |||||||| |||||| |||||||||| Sbjct 1306 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1247 Query 164051 GCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGC 164110 | | ||||| || ||||||| | || | || | || ||| | | ||| | | Sbjct 1246 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTG 1187 Query 164111 ATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGT 164170 ||||||||||||||||||||||| || |||||| |||||||| ||||||||| ||| Sbjct 1186 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 1127 Query 164171 TGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 164230 ||| || || || || |||||||| || | || || ||| || ||||||| | ||||| Sbjct 1126 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCA 1067 Query 164231 AGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGT 164290 ||| || ||||| | ||||| || || |||||||| || ||||||| ||| | || Sbjct 1066 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 1007 Query 164291 GTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 164350 ||||| || |||||||||||||| |||||||| || || ||| | ||||| ||||| || Sbjct 1006 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 947 Query 164351 ATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCG 164410 ||| |||||||| || |||||||| ||||| ||||| |||| || ||| || | | Sbjct 946 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 887 Query 164411 TGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC 164470 |||||||| |||| ||| || || | ||||||| || |||||||| |||||||| Sbjct 886 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 827 Query 164471 ATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATT 164530 || || || || |||||||| ||||| ||||| || ||||||||||||| ||| || Sbjct 826 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 767 Query 164531 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTT 164590 |||||| || ||||| || || |||||| | ||||| |||||||| || || || ||||| Sbjct 766 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTT 707 Query 164591 CACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 164650 ||| || | ||| || ||| ||||| |||||||| || |||||||| |||||||| || Sbjct 706 CACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 647 Query 164651 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGG 164710 | | | ||| |||| |||||||| | || || ||||| || || | ||||| ||| Sbjct 646 CGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAA 587 Query 164711 TCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGATCTCGCTGC 164770 || ||||||||||||||||| || ||||| ||||| ||||||||||| || || ||||| Sbjct 586 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGC 527 Query 164771 T 164771 | Sbjct 526 T 526 Score = 574 bits (636), Expect = 5e-159 Identities = 733/1006 (73%), Gaps = 10/1006 (1%) Strand=Plus/Plus Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265 ||||||||| | | || |||||||||||||| |||||||| || || | || ||| Sbjct 37260 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 37319 Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325 || || ||| | || | || |||||| | || || || || || | || ||| Sbjct 37320 CCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGG 37379 Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGT 165384 ||||| || || ||||| ||||||||| |||| || ||||| ||| | || || ||||| Sbjct 37380 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAA-CTTCTTAACCGCTGCAGT 37438 Query 165385 TTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCA 165444 ||||||||| || | | | | |||||| | | | || |||||||| || || || Sbjct 37439 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCACA 37498 Query 165445 AGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGG 165504 ||||||||| | ||| ||| | || || | ||| ||||||| || |||||||| Sbjct 37499 AGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCACGG 37558 Query 165505 GGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACGTCTCATCGGTA- 165563 ||||||| ||||| ||||| ||| | ||||| |||||| | || || ||| || Sbjct 37559 TGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG----ATCCGTGC 37614 Query 165564 ---TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCT 165620 | || || || ||||| || || ||||||||||| || |||||||||||| || | Sbjct 37615 AATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTAT 37674 Query 165621 TTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAG 165680 | || || || || || ||||| || |||||||||| || || ||| || || |||| Sbjct 37675 TCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAG 37734 Query 165681 CAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTC 165740 | || || | ||| | ||||| | ||||| || ||||||||||| |||| || |||| Sbjct 37735 CTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATTTC 37794 Query 165741 ATATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTA 165800 |||||||||| ||||| || | | |||| ||| |||| | || || ||||||| || Sbjct 37795 ATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTA 37854 Query 165801 CAGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACT 165860 | ||||| |||||| | | | |||||||||| | ||||||||| ||| || ||| || Sbjct 37855 CTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACC 37914 Query 165861 CTACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCT 165920 | ||||||| |||||||| || ||||||||||| || ||||| || ||||| || |||| Sbjct 37915 CAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCT 37974 Query 165921 TCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTA 165980 | || |||| ||| ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 37975 TTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAA 38034 Query 165981 TGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATG 166040 ||| | |||| ||| | | || | | ||||| ||||| || || ||||| |||| Sbjct 38035 CCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTATG 38094 Query 166041 ACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGA 166100 |||| || || || |||||| | ||||| ||||| || || ||||| || |||||||| | Sbjct 38095 ACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACTA 38154 Query 166101 AAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATG 166160 |||| |||||||| || |||||| ||||||||||| |||| | ||||| || |||| Sbjct 38155 AAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATG 38214 Query 166161 AGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206 | ||| || | |||||||| || ||||| || | || ||||| || Sbjct 38215 AAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 38260 >seq456 Length=400266 Score = 156 bits (172), Expect = 5e-33 Identities = 290/420 (69%), Gaps = 8/420 (2%) Strand=Plus/Minus Query 165699 TCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAG 165758 |||| | |||| || |||||| || ||||| || |||||||||| ||| ||||| | Sbjct 321036 TCTTTTTCCAAGAGTTTTATAACTAGATGTTGAACCCATTTCATATGACGGGAGTTGCCG 320977 Query 165759 GTATCCTGGGTGGTGCATTGCTTTC---TGCC--ATCCATGGTGTTACAGTAGAGAATAC 165813 | || || | | ||| |||| | ||| || ||| |||||| ||||| || || Sbjct 320976 GCATATTGTATTGGGCACTGCTCTGCTATGCACTATTCATAGTGTTATTGTAGAAAAGAC 320917 Query 165814 TCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGA 165873 | | | | |||||||||| | || ||| ||||| | | ||| | | |||||| || Sbjct 320916 TTTATCTGAAGATGGTGATGGTGTAAACACTTTGCATACCTTTAAACCAACTCAATCTGA 320857 Query 165874 AGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTT 165933 |||||| || ||| | || ||||| |||| || |||||||| ||||| || ||||| || Sbjct 320856 AGAAACTTATTCAGTCGTCACTGCCAACCACTTTTGGTCTCAAATCTTTGG-ATTGCTTT 320798 Query 165934 TAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGAC 165993 | |||||| | || || ||||||||||| | | | | || || || | | | | || Sbjct 320797 TTCTAATAAATGTTGATTATATTTCTTTATGTTATCTATACCAGTAATCGATTTATAGAT 320738 Query 165994 AAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCA 166053 ||| | | | || | | | | || |||| || |||| |||||||||| || || Sbjct 320737 GAGTGCTCTTAGAATAGTCGATTTGACTTTCAATCTATGTGCCTATGACTTTGCTTCTCA 320678 Query 166054 AGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTT 166113 ||| ||| | || ||| | || || || | || |||||||| ||||| |||||||| Sbjct 320677 AGAAATC-TATAAGAGGAAAATCCTGA-ATTCAGACTTTCTACACTAAAAATATTCTCTT 320620 >seq214 Length=442246 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/197 (73%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 165620 TTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCA 165679 || || || || ||||||||||| || |||||||||| || ||| ||| || || ||| Sbjct 75047 TTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCA-GTTTTGGTGTAGCA 75105 Query 165680 GCAATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTT 165739 || || || | ||| | ||||| | ||||| || ||||||| |||| || ||| Sbjct 75106 GCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTG----CTGAACCCATTT 75161 Query 165740 CATATGATGGGTGTTG-CAG-GTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTG 165797 ||||| ||||| |||| ||| |||| | |||| ||| || | || || ||||||| Sbjct 75162 CATATCATGGGGGTTGCCAGCGTAT--TAGGTGCTGCTCTGTAATGCGCTATTCATGGTG 75219 Query 165798 TTACAGTAGAGAATACT 165814 ||| ||||| |||||| Sbjct 75220 GTACTGTAGAAAATACT 75236 >seq318 Length=904506 Score = 89.7 bits (98), Expect = 6e-13 Identities = 141/201 (70%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 165328 TACTCACGGGTTGGCAAGTTCCTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTC 165387 ||| || || ||||| ||||||||| |||| ||| ||||| | || | |||||||| Sbjct 515868 TACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGTAACTTCTTAACCACTGCAGTTTC 515809 Query 165388 TACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGG 165447 |||||| || | | | | |||||| | | | || |||||||| | || ||||| Sbjct 515808 TACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCAAAGCACAAGG 515749 Query 165448 GGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGC 165507 |||||| || | ||| ||| | || | | ||| ||||||| || |||||||| || Sbjct 515748 GGATTTACTC-GTTGGTGTCAATTAGGCGATTTGTGGACTTTTGTTGCTCTCCACGGTGC 515690 Query 165508 TTTCGCTCTAATTGGTTTCAT 165528 | | | ||||||| ||| || Sbjct 515689 TGTTGGACTAATTGTTTTTAT 515669 >seq823 Length=108574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/155 (73%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 163873 TCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGAA 163931 ||||| || || |||| ||| | ||||| || || || || || ||||||||||||||| Sbjct 46638 TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAA 46697 Query 163932 CCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTCG 163991 |||||| | || || || | ||||| ||||| || || |||||||| || |||| | Sbjct 46698 CCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACT 46757 Query 163992 TCCAATGCAATTGGTCTTCACTTCTACCCCATTTG 164026 || || || ||| | || || ||||| || || Sbjct 46758 TCTGCGGCTATAGGTTTGCATTTTTACCCAATATG 46792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556882863562560