Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq6024 526 3e-144 seq353 96.9 4e-15 seq135 93.3 5e-14 >seq6024 Length=163856 Score = 526 bits (582), Expect = 3e-144 Identities = 712/989 (72%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| ||||| ||| | ||| | |||| |||| ||||| ||||| | Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| ||| | || ||| | | || || | || |||||||| |||||| Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCACCT 1393 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 || || ||||| || || || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 1392 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAAT 1333 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || || |||||||| || |||| | || || |||||| | || || ||||| || Sbjct 1332 ATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATA 1273 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 |||||||| ||| |||| ||||||||||| |||||||| ||||||||| || | | | Sbjct 1272 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAAT--TG 1215 Query 172120 TTCCAC-TTCCTTA-TCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACA 172177 ||| || || |||| | ||| | | |||||||| | |||||||||| | | Sbjct 1214 TTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1155 Query 172178 GATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTG 172237 | | |||||| | || ||||| ||| ||||||||||| ||||| |||| || || Sbjct 1154 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1095 Query 172238 CTGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 172297 |||| ||| | | |||||| | ||||| || || |||||||||||||| ||||| | Sbjct 1094 CTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 1035 Query 172298 TCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATC 172357 |||| ||||| |||||||||||| | || ||||| || ||||| ||||| || ||||| | Sbjct 1034 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 975 Query 172358 CTTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACG 172417 | || |||||| ||| ||||| || | || || || || ||||| || ||||| | Sbjct 974 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 915 Query 172418 GTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACG 172477 |||| || || || ||| | | ||||| || || || ||| ||||| || | | Sbjct 914 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 855 Query 172478 GATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTG 172537 | |||| ||||| ||||| |||||||| || || || ||||| || || ||||| |||| Sbjct 854 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 795 Query 172538 GTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAG 172597 | || | |||||||| |||||| ||||||||| || | | | || |||||| ||| Sbjct 794 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 735 Query 172598 CAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 172657 | | || ||||| ||| || | ||||| || || | ||||| | || ||||| |||| Sbjct 734 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 675 Query 172658 ACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTA 172717 |||| || |||||||| ||||||||||| || || ||| | | ||| | || || Sbjct 674 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATA 615 Query 172718 CATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATG 172777 | |||| ||| || ||||| | || ||||| ||||||||||||||||||||| | |||| Sbjct 614 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 555 Query 172778 CACACAACTTCCCATTAGACCTTGCTTCT 172806 | || |||||||| ||||||| ||| || Sbjct 554 CTCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 370 bits (410), Expect = 1e-97 Identities = 705/1040 (68%), Gaps = 25/1040 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| || |||||||| || | || ||||| ||| Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | ||||| || || | | | || ||||||||| ||| || ||||| Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| ||||| ||| Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAACTTCTTA 37427 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || ||||| || || |||| | | | ||| | | | || || ||||| Sbjct 37428 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGT 37487 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 || ||||||||||| || ||||||| ||| | || || | |||| ||||| Sbjct 37488 CCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTT 37547 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | || || | || ||||| |||||||| ||| | ||||| ||||| | || || Sbjct 37548 GCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 37607 Query 173311 CTTGTAGGCA--TCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCA 173368 || ||| | ||||||| || ||| |||||||||||| | || || || || Sbjct 37608 TCCGT--GCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTG 37665 Query 173369 CTAGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCG 173428 | | || | || || |||||||| ||| ||||||| || || ||| || | Sbjct 37666 TTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTG 37725 Query 173429 GTGTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGA 173488 |||| ||||| || ||||| | ||| | || | ||||| || || ||| || ||| Sbjct 37726 GTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGA 37785 Query 173489 ATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTC 173548 | |||||||| |||||||| ||||| || || |||||| || | ||||| || |||| Sbjct 37786 ACCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTC 37845 Query 173549 ATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGA 173608 ||||||| || || | || || || | ||||| || ||| ||| Sbjct 37846 ATGGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGATGGT---- 37889 Query 173609 TTCAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGA 173668 | | || ||| | || ||| | || || || | |||||||||||| ||| Sbjct 37890 -----GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGG 37944 Query 173669 TTACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTT 173728 |||| || ||| | || ||||| || || ||||| | || ||||| || ||| | | | Sbjct 37945 TTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGT 38004 Query 173729 TACACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCG 173788 |||| ||| | ||||| || ||||| || | ||| | |||| | | || | | Sbjct 38005 TACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAG 38064 Query 173789 TAGGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAG 173848 | ||||| || || || || | || || ||||| || ||||| ||||| | ||||| | Sbjct 38065 TCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGG 38124 Query 173849 AAGATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAG 173908 ||||||| || || ||||||||||||||||| ||||| || | || |||||||| | | Sbjct 38125 AAGATCCTGAATTTGAGACTTTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTG 38184 Query 173909 CATGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTAC 173968 | |||||| | || |||||| || ||||| ||| | |||| || || || || ||| Sbjct 38185 CTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTAC 38244 Query 173969 CAAGAGGTAACGCACTTTAA 173988 || | || ||||| |||||| Sbjct 38245 CACGTGGAAACGCTCTTTAA 38264 >seq353 Length=5262178 Score = 96.9 bits (106), Expect = 4e-15 Identities = 146/204 (72%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 || ||||| |||||| ||| || || || |||||||||||||| ||||| || ||| Sbjct 4174125 GAAAATCCAGCTTGGTATACACAGTATACGCCTTATCAAGCTGAGATTTCTCAAGGGAGA 4174184 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 |||||| |||| | |||||||| || | || || || || || ||| | || || || Sbjct 4174185 TTGGAATCTTTGCTTAATTACCAGACTATGATTACTGATCTTACTGGATTGCCTATGTCA 4174244 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAAT-GCTGT-TAGCATATA 158116 || || || | | ||||||| ||| || || || || ||||| ||| | | ||| Sbjct 4174245 AATGCTTCATTGCTTGATGAAGGAACAGCTGCTGCTGAGGCAATGGCTATGTGTAATAAT 4174304 Query 158117 ATTCTACAA-GAGATAAGAAGACT 158139 |||||| || || | || |||||| Sbjct 4174305 ATTCTAAAAGGAAAGAAAAAGACT 4174328 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 159664 CAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACAT 159723 ||||| ||||| ||| ||| || | ||| || ||||| || ||||| || | ||| Sbjct 4177379 CAGGTGGGTCTGACAAGTCCAGGTTTCATTGGAGCTGATGTTTGCCATCTCAATCTCCAT 4177438 Query 159724 AAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || ||||| || ||||| ||||||||||| |||||||| | ||||||||||| || Sbjct 4177439 AAAACATTTTGCATTCCCCATGGAGGTGGTGGTCCTGGGATGGGTCCTATTGGAGT 4177494 >seq135 Length=947859 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 172273 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATGTTCGTGTTCCAA 172332 || |||||||||||||| |||| ||||| |||| |||||||||||| | || |||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 172333 GCAGAGCATAACATTCTAATGCATCCTTTCCACATG 172368 || ||||| ||||| || ||||| || || ||||| Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATTTTACATG 378216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588006919744640