Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq6024 572 2e-158 seq214 98.7 1e-15 >seq6024 Length=163856 Score = 572 bits (634), Expect = 2e-158 Identities = 724/990 (73%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 162384 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162443 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 1513 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1454 Query 162444 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 162502 |||||| || ||| | ||| | ||||| ||||| || || |||| ||| | ||||| | Sbjct 1453 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCAC 1395 Query 162503 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 162562 | || || || || || || || |||||||| || |||| || || | ||||| |||| Sbjct 1394 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACA 1335 Query 162563 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 162622 | || || |||||||| || |||| |||| || || ||| | || || || || | Sbjct 1334 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 1275 Query 162623 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 162682 | |||||||| ||||| ||||||| ||| | || || || ||||||| | || | | Sbjct 1274 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1215 Query 162683 TATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAATGGGAACTCTCTTACC 162742 | | || ||| | | || | | |||||||| ||||| |||||||| || || Sbjct 1214 TTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1155 Query 162743 GTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACCTGTTGCAGCAGCATCG 162801 |||| |||||||| || ||||| ||| || ||||| || || ||||||||||| || | Sbjct 1154 GTCTGGGTATGCGCCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 1096 Query 162802 GCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGT 162861 || || ||| || ||||||| | |||||||| || ||||| | ||||| | || Sbjct 1095 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 1036 Query 162862 ATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCAT 162921 ||| |||||| ||||||| ||| |||| ||||| || ||||||||||| || ||||| Sbjct 1035 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 976 Query 162922 CCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCAC 162981 || || |||||||| || || || ||||| ||||| ||||| || |||||||| ||||| Sbjct 975 CCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCAT 916 Query 162982 GGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTAT 163041 ||||| ||||| || ||| | || | || || || |||| ||| || || | Sbjct 915 GGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 856 Query 163042 GGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTC 163101 ||||||| ||||||||||| ||||| || || || ||||| || || |||||||| || Sbjct 855 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 796 Query 163102 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 163161 || || ||||||||||||||||| |||||||| || ||||| || || |||||| | Sbjct 795 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 736 Query 163162 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTC 163221 ||||| |||||||| || || || |||||||| || | || | || ||||| ||| Sbjct 735 GCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 676 Query 163222 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 163281 ||||| || |||||||| |||||||| ||| | ||||| |||| |||||||| | || Sbjct 675 AACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAAT 616 Query 163282 ACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAAT 163341 |||||||| || || | |||||||| | ||||||||||||||||| || || ||| Sbjct 615 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 556 Query 163342 GCTCACAACTTCCCACTTGACCTGGCAGCT 163371 ||||| |||||||| || ||||| || ||| Sbjct 555 GCTCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 488 bits (540), Expect = 6e-133 Identities = 728/1023 (71%), Gaps = 10/1023 (1%) Strand=Plus/Plus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | || |||||||| ||| | |||||||| || Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| || ||| | || | || || ||| | || |||||||| || Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGG-TGCTAATTTTCT 163799 || || || ||||| ||||||||| |||| | ||||||| | || || ||| | || | | Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAACTTCT-T 37426 Query 163800 CACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGG 163858 || || || || || || |||||| | | | | |||||| || || || || |||| Sbjct 37427 AACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCT-TTGTTATTACTATGGG 37485 Query 163859 GTCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTG 163918 |||| || || || || ||||| || ||| ||| | || || | |||| ||||| Sbjct 37486 GTCCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTG 37545 Query 163919 TGGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTC 163978 | || |||||||| || || | || || ||||| ||| | || |||||||||||||||| Sbjct 37546 TTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTC 37605 Query 163979 GCCTGATTGGAATCA-GACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTC 164037 | | || ||| |||| || ||||| || || ||||||||||| |||||||| || Sbjct 37606 GA-TCCGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTT 37664 Query 164038 GTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTT 164097 ||| ||| || || || || || || ||||| || ||||||| || || || |||| Sbjct 37665 GTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTT 37724 Query 164098 GGAGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTG 164157 || || ||||| || || ||||| || | || | ||||| |||||||||||||| || Sbjct 37725 GGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTG 37784 Query 164158 AACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATT 164217 ||||| || ||||||||||| ||||| || || |||| | || |||||| |||||| Sbjct 37785 AACCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATT 37844 Query 164218 CACGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAG 164277 || || | || || |||||||| || | ||||||||| || ||||| || || Sbjct 37845 CATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGT 37904 Query 164278 GCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 164337 || ||| | | || || | ||||| |||||||| ||||| || || |||||||| ||| Sbjct 37905 GCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGG 37964 Query 164338 TCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTT 164397 || || ||||| || ||||| ||||| || || || ||| | ||||| || ||||| ||| Sbjct 37965 TCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 38024 Query 164398 GTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTT 164457 || || || | ||| |||||| || |||| | | || || ||||| ||||| Sbjct 38025 GTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTA 38084 Query 164458 CGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACT 164517 ||||| || || || || ||| ||||| | ||||| ||||||||||| || |||||| Sbjct 38085 CGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 38144 Query 164518 TTCTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGAC 164577 ||||| || || || || | || |||||||| | ||||| ||| | || | || Sbjct 38145 TTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGAT 38204 Query 164578 CAGC--CAGGAGAACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTT 164635 |||| || || ||| || | ||||| || || || || || | || || || |||| Sbjct 38205 CAGCCTCATGAAAAC--CTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTT 38262 Query 164636 AAT 164638 ||| Sbjct 38263 AAT 38265 >seq214 Length=442246 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/197 (72%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 164047 TTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCA 164106 || || || || ||||||||||| || ||||||| || || ||| |||||| || ||| Sbjct 75047 TTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCA-GTTTTGGTGTAGCA 75105 Query 164107 GCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTC 164166 || || || ||||| || | || | ||||| ||| ||||||| ||||||| || Sbjct 75106 GCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTG----CTGAACCCATTT 75161 Query 164167 CATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTC 164226 ||||| ||||| ||||| | || |||| | || || || |||||||| || | Sbjct 75162 CATATCATGGGGGTTGCCAGCGTATTAGGTGCTGCTCTGTAATGCGCTATTCATGGTGGT 75221 Query 164227 ACAGTTGAAAATACATT 164243 || || |||||||| || Sbjct 75222 ACTGTAGAAAATACTTT 75238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557542013924800