Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq6024 607 9e-169 seq456 145 9e-30 seq214 104 3e-17 seq318 93.3 5e-14 >seq6024 Length=163856 Score = 607 bits (672), Expect = 9e-169 Identities = 718/979 (73%), Gaps = 2/979 (0%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | ||||||||| | |||||||| || | || ||||| || ||| ||||||||||| Sbjct 1503 TGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1444 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | ||||| ||||| || || ||||| ||| | | ||| ||||| || || Sbjct 1443 ACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGA 1385 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || |||||||| || ||||| ||| |||| || || | ||||| ||||| || || || Sbjct 1384 TATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTC 1325 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 |||||| || ||||| ||||| ||||| ||| | || || || || || |||||||| Sbjct 1324 TGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGC 1265 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 ||| || | || || ||||| |||||||| ||||||| | || | ||| | || || Sbjct 1264 GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTT 1205 Query 167396 CCTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTAT 167455 | | |||| | | || |||||||||||||||||||| || |||||| ||||| Sbjct 1204 CTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 1145 Query 167456 GCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCT 167515 ||| || ||||| ||||||||| || ||||| || || || || ||||||| ||| | Sbjct 1144 GCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTT 1085 Query 167516 CGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTAC 167575 ||||||| | |||||||| || ||||| | |||||||| || ||||||||||| Sbjct 1084 GATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTAC 1025 Query 167576 ATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATAT 167635 ||||||| ||| |||| ||||| || |||||||||||||| |||||||| || || || Sbjct 1024 TTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACAT 965 Query 167636 GCTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGT 167695 | | ||||| ||||| |||||||||||||| || |||||||| ||||| ||||| |||| Sbjct 964 GTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGT 905 Query 167696 TACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTT 167755 |||||| || | | |||||||| |||| ||| || || | ||||||| || Sbjct 904 AACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATT 845 Query 167756 CGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGAT 167815 |||||| || ||||| || ||||| ||||| || ||||||||||| || || || |||| Sbjct 844 CGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGAT 785 Query 167816 CTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCC 167875 ||||||||| || |||||||| || || || | || |||||||| || || ||||| Sbjct 784 CTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCC 725 Query 167876 TGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGG 167935 ||| || ||||| |||| |||||||| || || Sbjct 724 TGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGG 665 Query 167936 TTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGA 167995 |||||| |||||||| || | |||||||| ||| || | ||| ||||| || Sbjct 664 TTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGA 605 Query 167996 CGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTT 168055 | | ||||||||| || ||||||||||||||||| || ||||||||||| ||||| Sbjct 604 TATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTT 545 Query 168056 CCCTCTCGACCTTGCTGCT 168074 |||||| ||||| |||||| Sbjct 544 CCCTCTAGACCTAGCTGCT 526 Score = 594 bits (658), Expect = 6e-165 Identities = 735/1005 (73%), Gaps = 8/1005 (1%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| |||||||||||||| |||||||| || || | || ||| Sbjct 37260 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 37319 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 || || ||| | || | || |||||| | || || || | || || || ||| Sbjct 37320 CCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGG 37379 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTT 168674 ||||| || || ||||| ||||||||| |||| ||| ||||| | || || |||||| Sbjct 37380 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAACTTCTTAACCGCTGCAGTT 37439 Query 168675 AGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAA 168734 |||||| || || | | | |||||| | | | || |||||||| || |||||| Sbjct 37440 TCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCACAA 37499 Query 168735 GGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGG 168794 |||||||| | ||||||||| | || || | ||| ||||||| || |||||||| Sbjct 37500 GGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCACGGT 37559 Query 168795 GCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA-- 168852 ||||||| ||||| ||||| ||| | ||||| |||||||| || || ||| || Sbjct 37560 GCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG----ATCCGTGCA 37615 Query 168853 --TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 168910 | || || || ||||| || || ||||||||||| || |||||||||||| || || Sbjct 37616 ATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATT 37675 Query 168911 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGC 168970 || || || || || ||||| || |||||||||| || || ||| || || |||| Sbjct 37676 CCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGC 37735 Query 168971 AATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCA 169030 || || |||||| | ||||| | ||||| || ||||||||||| ||||| |||||||| Sbjct 37736 TATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATTTCA 37795 Query 169031 TATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTAC 169090 ||||||||| || || || | || || | || |||| | || |||||||||| ||| Sbjct 37796 TATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTAC 37855 Query 169091 AGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAG 169150 ||||| |||||| | | | |||||||||| |||||||| ||| || ||| || Sbjct 37856 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 37915 Query 169151 CACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 169210 ||||| | || || || |||||||||||||| || ||||| || ||||| || ||||| Sbjct 37916 AACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTT 37975 Query 169211 TGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 169270 ||| |||| || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 37976 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 38035 Query 169271 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 169330 ||| | |||| ||| | | || | | ||||| ||||| || || ||||| ||||| Sbjct 38036 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTATGA 38095 Query 169331 CTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAA 169390 ||| ||||| || |||||| | ||||| |||||||| || |||||||| |||||||| || Sbjct 38096 CTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACTAA 38155 Query 169391 GAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGA 169450 || || ||||| ||||||||| ||||||| ||| | || || ||||| |||||||| Sbjct 38156 AAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 38215 Query 169451 GAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 ||| || | ||||||||||| || || || || || || || || Sbjct 38216 AAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 38260 >seq456 Length=400266 Score = 145 bits (160), Expect = 9e-30 Identities = 297/436 (68%), Gaps = 8/436 (2%) Strand=Plus/Minus Query 168972 ATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCAT 169031 || || |||||| | |||| | |||| || |||||| || |||| ||||||||| Sbjct 321052 ATATTTCGATTCATCTTCTTTTTCCAAGAGTTTTATAACTAGATGTTGAACCCATTTCAT 320993 Query 169032 ATGATGGGTGTAGCAGG--TATT---TTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTG 169086 |||| ||| || || || |||| ||||| || |||| | | |||||| ||| Sbjct 320992 ATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTGCTATGCACTATTCATAGTG 320933 Query 169087 TTACAGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTG 169146 ||| ||||| || ||| | | | |||||||||| | ||| ||||| | | ||| Sbjct 320932 TTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGTAAACACTTTGCATACCTTTA 320873 Query 169147 ACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGA 169206 | ||||| || || || |||||| | || ||||| |||| || |||||||| | Sbjct 320872 AACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCCAACCACTTTTGGTCTCAAA 320813 Query 169207 TCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTG 169266 ||||||| ||||| || |||||| | || || ||||||||||| | | | | || | Sbjct 320812 TCTTTGG-ATTGCTTTTTCTAATAAATGTTGATTATATTTCTTTATGTTATCTATACCAG 320754 Query 169267 TTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTT 169326 | || | | | | || ||| | | | || | | | | || |||| || |||| | Sbjct 320753 TAATCGATTTATAGATGAGTGCTCTTAGAATAGTCGATTTGACTTTCAATCTATGTGCCT 320694 Query 169327 ATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACA 169386 ||||||||| ||| ||||| ||| | || ||| |||| || || |||| ||||||| Sbjct 320693 ATGACTTTGCTTCTCAAGAAATC-TATAAGAGGAAAATCCTGA-ATTCAGACTTTCTACA 320636 Query 169387 CCAAGAACATCCTCTT 169402 | || || || ||||| Sbjct 320635 CTAAAAATATTCTCTT 320620 >seq214 Length=442246 Score = 104 bits (114), Expect = 3e-17 Identities = 141/195 (72%), Gaps = 5/195 (3%) Strand=Plus/Plus Query 168909 TTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCA 168968 || || || || ||||||||||| || |||||||||| || ||| ||| || || || Sbjct 75047 TTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCA-GTTTTGGTGTAGCA 75105 Query 168969 GCAATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTT 169028 || || || |||||| | ||||| | ||||| || ||||||| ||||| |||||| Sbjct 75106 GCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTG----CTGAACCCATTT 75161 Query 169029 CATATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTT 169088 ||||| ||||| || || | | || || | || || | || |||||||||| | Sbjct 75162 CATATCATGGGGGTTGCCAGCGTATTAGGTGCTGCTCTGTAATGCGCTATTCATGGTGGT 75221 Query 169089 ACAGTAGAGAATACT 169103 || ||||| |||||| Sbjct 75222 ACTGTAGAAAATACT 75236 >seq318 Length=904506 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 168617 TACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTAG 168676 ||| || || ||||| ||||||||| |||| || ||||| | || | |||||| Sbjct 515868 TACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGTAACTTCTTAACCACTGCAGTTTC 515809 Query 168677 TACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGG 168736 |||||| || || | | | |||||| | | | || |||||||| | |||||||| Sbjct 515808 TACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCAAAGCACAAGG 515749 Query 168737 GGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGC 168796 |||||| || | ||||||||| | || | | ||| ||||||| || |||||||| || Sbjct 515748 GGATTTACTC-GTTGGTGTCAATTAGGCGATTTGTGGACTTTTGTTGCTCTCCACGGTGC 515690 Query 168797 TTTCGCTCTAATCGGTTTCAT 168817 | | | ||||| | ||| || Sbjct 515689 TGTTGGACTAATTGTTTTTAT 515669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560565786217600