Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq6024 632 2e-176 seq456 129 7e-25 seq214 100 3e-16 seq318 93.3 5e-14 seq135 84.2 3e-11 >seq6024 Length=163856 Score = 632 bits (700), Expect = 2e-176 Identities = 722/964 (75%), Gaps = 8/964 (1%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||||| || | || ||||||||||| |||||||||| ||| | ||| | ||||| Sbjct 1485 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1426 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || | |||||| | || |||||||| || ||||| || ||||| || || Sbjct 1425 -TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 1367 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 ||| || |||| || || | ||||| ||||| || || |||||||| || | || | Sbjct 1366 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1307 Query 182000 CTCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTG 182059 || || || ||| | || || |||||||| |||||||| || || ||||||| || Sbjct 1306 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1247 Query 182060 GCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGC 182119 | | || || || ||||||| | || ||||| | || ||| | | || | || || Sbjct 1246 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGG--TGTA-GC 1190 Query 182120 CT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTG 182176 | ||||||| ||||||||||||||| || ||| | |||||||| || ||||| Sbjct 1189 TTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGC 1130 Query 182177 TGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGG 182236 ||| ||||| || ||||| || || || || ||||||| ||||| ||||||| | || Sbjct 1129 TGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGG 1070 Query 182237 TCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTT 182296 |||||| || || |||| ||||| || |||||||| || || ||||||| |||| | Sbjct 1069 TCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGAT 1010 Query 182297 GGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGG 182356 || ||||| |||||||||||||| |||||||| || || |||||||| || ||||| || Sbjct 1009 TGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGG 950 Query 182357 TGTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGT 182416 ||||||||| ||||| || || ||||| ||||| ||||| ||||| || ||| | | Sbjct 949 TGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGAT 890 Query 182417 CCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGA 182476 | | || || || || | || || || | ||||||| ||||||||||| ||||| Sbjct 889 CAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGA 830 Query 182477 GACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATC 182536 || ||||| ||||| || || ||||| || || || || |||||||||||||| || Sbjct 829 AACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAG 770 Query 182537 ATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTG 182596 |||||||| || ||||| || || |||||| | ||||| |||||||| || || || || Sbjct 769 TTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTG 710 Query 182597 GTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 182656 |||||| || | ||| | ||| ||||| |||||||| || |||||||| |||||||| Sbjct 709 GTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 650 Query 182657 GTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGC 182716 ||| | ||||| |||| |||||||| |||| || ||||| ||| | | |||||||| Sbjct 649 ATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGC 590 Query 182717 TGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGC 182776 | ||||||||||||||||||||||| ||||| || || |||||||| ||||| || || Sbjct 589 TAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 530 Query 182777 TGCT 182780 |||| Sbjct 529 TGCT 526 Score = 596 bits (660), Expect = 2e-165 Identities = 742/1011 (73%), Gaps = 8/1011 (1%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || || || || ||||| || ||||| || || | || || Sbjct 37260 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 37319 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 || || ||| | ||| | || |||||| | || || ||| | ||||| || ||| Sbjct 37320 CCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGG 37379 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGCTGT 183371 |||||||||||| | ||| ||||||| | ||||| ||| ||||| | || || || || Sbjct 37380 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCAGT 37438 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || |||||| | | | | |||||| | | ||||| |||||||| || | || Sbjct 37439 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCACA 37498 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 |||||| ||| || ||||| ||| | || || | |||| |||||| || |||||||| Sbjct 37499 AGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCACGG 37558 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 ||| || | || || ||||| ||| | || || |||||||||||||| | | | Sbjct 37559 TGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGATCCGTGCAATT 37618 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || ||||| ||||| || || ||||||||||| |||||||||||||| ||||||||| Sbjct 37619 GCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCT 37678 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671 || |||||||| ||||||||| ||||| ||||| |||||||| || |||||||| || Sbjct 37679 GATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCTAT 37738 Query 183672 CTTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCA 183728 ||| ||| |||| || |||| ||||||| || ||||||||| | ||||| || || Sbjct 37739 ATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-CATAACTGGACGCTGAACCCATTTCA 37795 Query 183729 TATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCAC 183788 ||||||||| ||||| || || |||| | || || || | ||||| ||||||| || Sbjct 37796 TATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTAC 37855 Query 183789 AGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTC 183848 ||||| ||||| || | ||||||||| || ||||| |||||| || ||| | | Sbjct 37856 TGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCC 37915 Query 183849 CACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTT 183908 ||||||| ||||| || ||||| |||||||| || || || || ||||| |||||||| Sbjct 37916 AACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTT 37975 Query 183909 CGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCAT 183968 |||||||| ||| |||||| |||||||| || ||||||||||| ||||| || || | Sbjct 37976 TGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 38035 Query 183969 GGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGA 184028 ||| | ||| | | || |||| | | || || ||||| ||||| ||||| ||||| Sbjct 38036 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTATGA 38095 Query 184029 TTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAA 184088 || || ||| |||||| | ||||| |||||||| ||||||||||| |||||||| || Sbjct 38096 CTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACTAA 38155 Query 184089 GAACATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGA 184148 || || || | || ||||| | ||||| ||| | || || ||||| || ||||| Sbjct 38156 AAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 38215 Query 184149 GAATTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 || ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 38216 AAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAATG 38266 >seq456 Length=400266 Score = 129 bits (142), Expect = 7e-25 Identities = 303/448 (68%), Gaps = 11/448 (2%) Strand=Plus/Minus Query 183661 GTAGCAGCAATCTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAAC 183720 |||||| | || ||| ||||| | || || | || | || | |||| || ||| ||| Sbjct 321061 GTAGCAACTATATTTCGATTCATCTTCTTTTTCCAAGAGTTTTATAACTAGATGTTGAAC 321002 Query 183721 CCCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAG---TGC--TA 183775 || || ||||||| ||||||||| || ||| | | ||||| ||| | ||| || Sbjct 321001 CCATTTCATATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTGCTATGCACTA 320942 Query 183776 TCCATGGTGTCACAGTAGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCA 183835 | ||| |||| | ||||| || || || | ||||||||| || | |||||| || Sbjct 320941 TTCATAGTGTTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGTAAACACTTTGC 320882 Query 183836 AGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCT 183895 | | ||| | | |||||| ||||| || ||||| | || || || || | || | Sbjct 320881 ATACCTTTAAACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCCAACCACTTTT 320822 Query 183896 GGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGT 183955 |||| |||||||| || |||| ||| ||||| |||| || | ||||||||||| | Sbjct 320821 GGTCTCAAATCTTTGGA-TTGCTTTTTCTAATAAATGTTGATTATATTTCTTTATGTTAT 320763 Query 183956 TTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTG-CTCTTAAT 184014 | | || || || | | | | | | | || || | || | | | ||| || | ||| Sbjct 320762 CTATACCAGTAATCGATTTATAGATGAGTGCTCTTAGAAT-AGTCGATTTGACTTTCAAT 320704 Query 184015 CTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAG 184074 || |||| ||||| |||| |||||| ||| | || ||| |||| ||| || || Sbjct 320703 CTATGTGCCTATGACTTTGCTTCTCAAGAAATC-TATAAGAGGAAAATCCTGAA-TTCAG 320646 Query 184075 ACGTTCTACACAAAGAACATACTTCTTA 184102 || |||||||| || || || | ||||| Sbjct 320645 ACTTTCTACACTAAAAATATTC-TCTTA 320619 >seq214 Length=442246 Score = 100 bits (110), Expect = 3e-16 Identities = 146/202 (72%), Gaps = 11/202 (5%) Strand=Plus/Plus Query 183605 TATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAG 183664 ||||||| || ||||| |||||||||||| ||||| ||||| || ||||| || |||| Sbjct 75045 TATTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCC-AGTTTTGGTGTAG 75103 Query 183665 CAGCAATCTTTAGAT---TCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACC 183721 |||| || ||| ||| |||| || |||| ||||||| | |||| | | |||| Sbjct 75104 CAGCTATATTTCGATTCATCCTCTTTTTCC--AAGGGTTT-AATAACT----GCTGAACC 75156 Query 183722 CCTTCCATATGATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATG 183781 | || ||||| ||||| ||||| | || |||| | || || | ||||| |||| Sbjct 75157 CATTTCATATCATGGGGGTTGCCAGCGTATTAGGTGCTGCTCTGTAATGCGCTATTCATG 75216 Query 183782 GTGTCACAGTAGAGAATACATT 183803 ||| || ||||| ||||| || Sbjct 75217 GTGGTACTGTAGAAAATACTTT 75238 >seq318 Length=904506 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 183315 TACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTC 183374 |||||||||| | ||| ||||||| | |||||| |||||| | || | || || || Sbjct 515868 TACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGTAACTTCTTAACCACTGCAGTTTC 515809 Query 183375 GACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGG 183434 || |||||| | | | | |||||| | | ||||| |||||||| | | ||||| Sbjct 515808 TACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCAAAGCACAAGG 515749 Query 183435 GGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGC 183494 ||| || | || ||||| ||| | || | | |||| |||||| || ||||||||||| Sbjct 515748 GGATTTACT-CGTTGGTGTCAATTAGGCGATTTGTGGACTTTTGTTGCTCTCCACGGTGC 515690 Query 183495 CTTTGCTCTCATTGGTTTCAT 183515 ||| || |||| ||| || Sbjct 515689 TGTTGGACTAATTGTTTTTAT 515669 >seq135 Length=947859 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 182247 TTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTTTTCCAA 182306 || || |||| ||||| | |||||||| | || ||||||| |||| | || |||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 182307 GCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGG 182347 |||||||| ||||| |||||||| || || ||||||| || Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATTTTACATGTTAGG 378211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611649939291200