Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq6024 648 0.0 seq456 138 1e-27 seq102 136 4e-27 seq214 102 9e-17 seq318 98.7 1e-15 seq823 95.1 1e-14 seq54 95.1 1e-14 seq135 89.7 6e-13 >seq6024 Length=163856 Score = 648 bits (718), Expect = 0.0 Identities = 722/961 (75%), Gaps = 2/961 (0%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 ||||||||||| | || ||||| |||||| | |||||||| ||| | |||| || Sbjct 1485 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACT 1426 Query 164851 ATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGA 164909 | ||| ||||||| || ||||| ||||| || || || || ||||||||||||||||| Sbjct 1425 -TCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGA 1367 Query 164910 ACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTC 164969 |||||| | || |||||| | || || ||||| || || |||||||| | |||| | Sbjct 1366 ACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTAC 1307 Query 164970 TTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATG 165029 |||| || || || | || || || || || |||||||| ||| || | |||||||| Sbjct 1306 TTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATG 1247 Query 165030 GTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTG 165089 ||| ||||| || |||||||| || | |||| | || ||| | | ||||||||||| Sbjct 1246 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTG 1187 Query 165090 CTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 165149 ||||||||||||||||||||||| || ||| || |||||||| ||||||||| || Sbjct 1186 TTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGT 1127 Query 165150 AGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCA 165209 |||||| || ||||| || |||||| | || |||||| || ||||||| | ||||| Sbjct 1126 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCA 1067 Query 165210 AGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGT 165269 ||| || || ||||||||||||||||| || |||||||||||||| |||| |||| | || Sbjct 1066 AGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 1007 Query 165270 CTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGT 165329 ||||| || || || ||||| |||||||| || || |||||| | ||||| ||||| || Sbjct 1006 ATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGT 947 Query 165330 ATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTCCG 165389 |||||| || || || ||| |||||||||||| | || || || | || | Sbjct 946 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 887 Query 165390 CGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAGAC 165449 || || || |||| || | || | ||||| | || || ||||| ||||| || Sbjct 886 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAAC 827 Query 165450 CTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTT 165509 ||||| ||||| || || || || || || || || | || |||||||| || || Sbjct 826 TTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 767 Query 165510 CAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTT 165569 ||||||||| ||||| | || |||||| | || || ||||||||||| ||||| ||||| Sbjct 766 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTT 707 Query 165570 CACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTC 165629 ||||||| | ||| ||||||| ||||| |||||||| || |||||||| |||||||| || Sbjct 706 CACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATC 647 Query 165630 TATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGG 165689 | ||||||||||| | || ||| |||||||| || | ||||||||| Sbjct 646 CGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAA 587 Query 165690 TCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACCTCGCTGC 165749 || |||||||||||||||||||| ||||| ||||| |||||||| || ||||| ||||| Sbjct 586 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGC 527 Query 165750 T 165750 | Sbjct 526 T 526 Score = 580 bits (642), Expect = 1e-160 Identities = 725/989 (73%), Gaps = 4/989 (0%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| |||||||| || || | || |||| || ||| | || Sbjct 37278 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGCGCCTATTTCGCC 37337 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| |||| || || || || || || |||||||| |||||| | || Sbjct 37338 TTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGGTATACCCATGGATTGGCT 37397 Query 166311 AGCAGTTATCTGGAGGG-TGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGC 166369 || ||| |||| || ||||| ||| | || || |||||||||||||| || || Sbjct 37398 AGTTCCTATTTGGAAGGCTGCAA-CTTCTTAACCGCTGCAGTTTCTACTCCTGCTAATAG 37456 Query 166370 TATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTG 166429 | | | |||||| | | | || |||||||| || || ||||||||||| | || Sbjct 37457 TTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCACAAGGGGATTTTACTCGTTG 37516 Query 166430 GTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGG 166489 ||| ||| | || || | ||| | ||||||||||||||||||||||| | ||||| || Sbjct 37517 GTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCACGGTGCTTTCGGACTAATAGG 37576 Query 166490 TTTCATGCTTCGGCAGTTTGAAATCGCTCGTCTAGTAGGTATT-CGTCCGTACAATGCAA 166548 ||| ||| | || || |||||| | ||||| || | ||| || || || ||||||| Sbjct 37577 TTTTATGTTACGTCAATTTGAACTTGCTCGATCCGT-GCAATTGCGACCTTATAATGCAA 37635 Query 166549 TCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTC 166608 |||| || |||||||| |||||||| || ||| ||| || || || || || || |||| Sbjct 37636 TCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTC 37695 Query 166609 AATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTT 166668 | || |||||||||| || || ||| || || |||| || || |||||| |||| | Sbjct 37696 AGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCT 37755 Query 166669 TCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTA 166728 | | ||||| || || |||||||| ||||||||||||||||||||||| || || || Sbjct 37756 TTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATATGATGGGGGTTGCCGGCG 37815 Query 166729 TTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATC 166788 | | |||| ||| |||| | || || ||||||| ||| ||||| || ||| | | | Sbjct 37816 TATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTG 37875 Query 166789 AAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCT 166848 |||||||||| |||||||| ||| || || || | ||||||| |||||||| | Sbjct 37876 AAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTT 37935 Query 166849 ATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATA 166908 ||||||||||||| || ||||||| |||||| || ||||| || |||| ||| |||| Sbjct 37936 ATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATA 37995 Query 166909 AGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCA 166968 | | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | Sbjct 37996 AACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTC 38055 Query 166969 TCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAA 167028 | || | | ||||| ||||| || || ||||| |||||||| ||||| || || | Sbjct 38056 TTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCTCAGGAGATCC 38115 Query 167029 GGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGG 167088 | ||||| || |||||||| ||||| || ||||| || || || |||||||| || || | Sbjct 38116 GTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACTAAAAATATTCTCTTAAACGAAG 38175 Query 167089 GTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAG 167148 |||| ||| |||||||||| || ||||| |||||||| | | |||||||||| | Sbjct 38176 GTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGG 38235 Query 167149 AGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 ||||||| || | || |||||||| ||| Sbjct 38236 AGGTTCTACCACGTGGAAACGCTCTTTAA 38264 >seq456 Length=400266 Score = 138 bits (152), Expect = 1e-27 Identities = 297/438 (68%), Gaps = 12/438 (3%) Strand=Plus/Minus Query 166650 ATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCAT 166709 || || |||||| || | || | |||| || | |||| || |||||||||||||| Sbjct 321052 ATATTTCGATTCATCTTCTTTTTCCAAGAGTTTTATAACTAGATGTTGAACCCATTTCAT 320993 Query 166710 ATGATGGGTGTAGCAGG--TATT---CTCGGTGGTGCATTGCTTTCTGCCATCCATGGTG 166764 |||| ||| || || || |||| | || ||| |||| | | || ||| ||| Sbjct 320992 ATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTGCTATGCACTATTCATAGTG 320933 Query 166765 TTACAGTAGAGAACACTCTGTATCAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCG 166824 ||| ||||| || ||| | | | |||||||||| | ||| ||||| | | || Sbjct 320932 TTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGTAAACACTTTGCATACCTTTA 320873 Query 166825 ACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGA 166884 | | |||||| |||||||| |||||| | || || || |||| || ||||||||| | Sbjct 320872 AACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCCAACCACTTTTGGTCTCAAA 320813 Query 166885 TCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTG 166944 |||| || ||||| ||| |||||| | || || ||||||||||| | | | | || | Sbjct 320812 TCTTTGG-ATTGCTTTTTCTAATAAATGTTGATTATATTTCTTTATGTTATCTATACCAG 320754 Query 166945 TTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTT 167004 | || | | | | || ||| | | | || | | | | || |||| || |||| | Sbjct 320753 TAATCGATTTATAGATGAGTGCTCTTAGAATAGTCGATTTGACTTTCAATCTATGTGCCT 320694 Query 167005 ATGACTTTGTTTCCCAAGAA--CTAAGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTA 167062 ||||||||| ||| |||||| ||| || || ||||||| || | || ||||| Sbjct 320693 ATGACTTTGCTTCTCAAGAAATCTA---TAAGAGGAAAATCCTGA-ATTCAGACTTTCTA 320638 Query 167063 TACCAAGAACATTCTCTT 167080 || || || |||||||| Sbjct 320637 CACTAAAAATATTCTCTT 320620 >seq102 Length=2022542 Score = 136 bits (150), Expect = 4e-27 Identities = 206/292 (71%), Gaps = 2/292 (1%) Strand=Plus/Plus Query 164989 CACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAATGGTTGTACAACGGTGGTCCT 165048 || || || || || ||||||| || || |||||||| || ||||| | |||| || Sbjct 1592039 CATTTTTACCCAATACGGGAAGCATCATTTATTGATGAATGATTATACAATGATGGTTCT 1592098 Query 165049 TACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGG 165108 || || | |||| | | ||| | | ||||||||||| |||||||||| | ||||| Sbjct 1592099 TATGAGCTAATTGTTCTATATTTCTTACTTGGTGTAGCTTGTTACATGGGTCCTAAGTGG 1592158 Query 165109 GAACT--GTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGTAGCATATAGCGCACCTG 165166 || | || || || || ||||||| ||||||||| || | ||| | ||| Sbjct 1592159 AAAGTTAGTTTTTCCATCTGCGTATGCGCCCTTGGATTGTAGTTACGTATTCAACTCCTA 1592218 Query 165167 TCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATG 165226 | | |||| | | |||||| || ||||||| | |||||||| || || | ||||| Sbjct 1592219 TTATAGTTGCTACTACTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTTTGATG 1592278 Query 165227 GTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAAGC 165278 |||||||||| || |||||| ||||||| ||| |||| | | || ||||| Sbjct 1592279 GTATGCCTCTAGGAATCTCTAGTACTTTCAACATTATGATTGCATTGCAAGC 1592330 >seq214 Length=442246 Score = 102 bits (112), Expect = 9e-17 Identities = 144/197 (73%), Gaps = 9/197 (5%) Strand=Plus/Plus Query 166587 TTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCA 166646 || || || || ||||||||||| || |||||||||| || ||| ||| || || || Sbjct 75047 TTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCAGTTTT-GGTGTAGCA 75105 Query 166647 GCAATCTTCCGATTCCTCCTTTTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTT 166706 || || || |||||| |||| || | ||||| || | ||||| |||||||||||| Sbjct 75106 GCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTG----CTGAACCCATTT 75161 Query 166707 CATATGATGGGTGTAG-CAG-GTATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTG 166764 ||||| ||||| || | ||| |||| | |||| ||| || | || || ||||||| Sbjct 75162 CATATCATGGGGGTTGCCAGCGTAT--TAGGTGCTGCTCTGTAATGCGCTATTCATGGTG 75219 Query 166765 TTACAGTAGAGAACACT 166781 ||| ||||| || ||| Sbjct 75220 GTACTGTAGAAAATACT 75236 >seq318 Length=904506 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 166295 TACTCATGGACTCGCAAGCAGTTATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTC 166354 ||| |||||| | || || ||| |||| ||| ||||| | || | |||||||| Sbjct 515868 TACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGTAACTTCTTAACCACTGCAGTTTC 515809 Query 166355 TACTCCAGCAGATGCTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGG 166414 |||||| || || | | | |||||| | | | || |||||||| | || ||||| Sbjct 515808 TACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCAAAGCACAAGG 515749 Query 166415 GGATTTCGTCAGGTGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGC 166474 |||||| || | ||||| ||| | || | | ||| | |||||||||||||||||||| Sbjct 515748 GGATTTACTC-GTTGGTGTCAATTAGGCGATTTGTGGACTTTTGTTGCTCTCCACGGTGC 515690 Query 166475 TTTTGCCCTAATTGGTTTCAT 166495 | ||| ||||||| ||| || Sbjct 515689 TGTTGGACTAATTGTTTTTAT 515669 >seq823 Length=108574 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 164857 TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTGAACCTGTC 164916 ||||||| || ||||| ||||| || || || || ||||||||||||||||||||||| Sbjct 46644 TTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 46703 Query 164917 GCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGTCTTCT 164973 | || |||||| | || || ||||| || || |||||||| | |||| ||||| Sbjct 46704 TCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCT 46760 >seq54 Length=3626826 Score = 95.1 bits (104), Expect = 1e-14 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 165550 CCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAAC 165609 || || || ||||| |||||||||||| | ||||||||||| ||||| |||||||| ||| Sbjct 2788072 CCCGTTGTAGGTATTTGGTTCACTGCTTTAGGTGTTAGCACTATGGCTTTCAACCTAAAC 2788131 Query 165610 GGTTTCAACTTCAACCA 165626 |||||||| |||||||| Sbjct 2788132 GGTTTCAATTTCAACCA 2788148 >seq135 Length=947859 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 165217 TTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTCTTCCAA 165276 || ||||||||||||||| | || ||||| ||||||| |||| |||| | || |||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 165277 GCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGC 165318 || || || ||||| |||||||| || || ||||| | ||| Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATTTTACATGTTAGGC 378210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563618356341760