Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq6024 646 1e-180 seq823 100 3e-16 seq102 100 3e-16 seq135 84.2 2e-11 >seq6024 Length=163856 Score = 646 bits (716), Expect = 1e-180 Identities = 728/972 (75%), Gaps = 2/972 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 542 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 601 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | ||||| ||| ||||| || | || ||||| || Sbjct 602 ATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTG 661 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||||| ||| | ||||| |||||||| || || Sbjct 662 AAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAACCAAATACCTACT 721 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| || || | ||||||| ||||||||| |||||| ||| Sbjct 722 ACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 781 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || || |||||||||||||| || |||||| Sbjct 782 AAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGA 841 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | ||| Sbjct 842 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAG 901 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 902 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACGCCT 961 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||||||||| || || |||||||| |||| ||| ||||| Sbjct 962 AACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 1021 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| || ||||| || | ||||| Sbjct 1022 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTGGATAG 1081 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| || Sbjct 1082 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGG 1141 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||||||| | | |||||| Sbjct 1142 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGT 1201 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | ||| || | |||| || | |||||| || ||||| |||| |||||| || | | Sbjct 1202 AAGAAATGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGAT 1261 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || ||||| | ||| ||||| ||| | |||| | |||| Sbjct 1262 GCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCA 1321 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 |||||||| || |||||||| || | ||||| |||| || || ||||| ||||| ||| Sbjct 1322 CCAGAAATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCA 1381 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| || || |||||| ||| ||| || || || || ||||| ||| || | | || Sbjct 1382 ATATCTACCGGAGGTGCAGCAATGAAAGCGATAATAAATACAGA-AGTTGCGGTCAATAA 1440 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 ||| || ||||| | | |||||||| |||| || | |||||| | |||| ||| | Sbjct 1441 AGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTGGTTAT 1500 Query 84944 CCAATCACAGAA 84955 ||| | |||||| Sbjct 1501 CCAGTTACAGAA 1512 >seq823 Length=108574 Score = 100 bits (110), Expect = 3e-16 Identities = 116/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 84714 CAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATG 84773 || || || || ||||| | ||| ||||| ||| | |||| | |||||||||||| Sbjct 46792 CATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATA 46733 Query 84774 ATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACT 84833 || |||||||| || | ||||| |||| || || ||||| ||||| |||||||| || Sbjct 46732 ATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCTACC 46673 Query 84834 GGGGGTGCACCAACGAATGCAATGATGAA-ACAGA 84867 || |||||| ||| ||| || || || || ||||| Sbjct 46672 GGAGGTGCAGCAATGAAAGCGATAATAAATACAGA 46638 >seq102 Length=2022542 Score = 100 bits (110), Expect = 3e-16 Identities = 220/326 (67%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 84461 GTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGG 84520 |||||| || | ||||| || || ||||| |||||| | || ||||| || | || Sbjct 1592310 GTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAAAAAAGCTTCCTTGACCAATTGG 1592251 Query 84521 ATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAAC-ACAGATCC 84579 ||| | | ||| |||| || || || || |||| || || | ||| ||| |||| Sbjct 1592250 ATAGATCAAGAAAACAGTAGTAGCAACTATAATAGGAGTTGAATACGTAACTACA-ATCC 1592192 Query 84580 ATGGACGCATACCGAGACGATATGA--AAGTTCCCATTCACGACCCATGTAAGCAAATGC 84637 | || ||||||| ||| | | | || || ||| | | ||||||||||| | | | Sbjct 1592191 AAGGGCGCATACGCAGATGGAAAAACTAACTTTCCACTTAGGACCCATGTAACAAGCTAC 1592132 Query 84638 ACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTC 84697 ||||| | ||| | | |||| || | ||||| ||| |||| |||| ||||| || Sbjct 1592131 ACCAAGTAAGAAATATAGAACAATTAGCTCATAAGAACCATCATTGTATAATCATTCATC 1592072 Query 84698 CATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAAC 84757 ||| || |||||||| || || || ||||| | | | ||||| | | | |||| Sbjct 1592071 AATAAATGATGCTTCCCGTATTGGGTAAAAATGCAAATCTATAGCTGCAAAAGTAGGAAT 1592012 Query 84758 TACGGCACCAGAAATGATGTTGTTTC 84783 | ||||||| |||| || || |||| Sbjct 1592011 AATGGCACCATAAATAATATTATTTC 1591986 >seq135 Length=947859 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 84402 CCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAG 84461 || ||||||| ||| || |||||||||||||| || || || ||||| |||| ||| || Sbjct 378211 CCTAACATGTAAAATGGGTGCATAAGGATGTTCTGCTCAGCTTGGAATACAATCATAAAG 378270 Query 84462 TTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAA 84502 ||||| || | ||||| || | ||||| |||||||| || Sbjct 378271 TTGAAAGTACTGGAGATTCCTATAGGCATACCATCAGAAAA 378311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571230583097920