Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq33 165 9e-36 seq304 109 6e-19 >seq33 Length=1871104 Score = 165 bits (182), Expect = 9e-36 Identities = 570/878 (65%), Gaps = 21/878 (2%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || |||||||| ||||||||||||||||||||||||| ||||| | ||||| || Sbjct 633999 TTCTGATATTCACCAACTCTTTTTTCAAAGAAATTAGTCTTTCCTTGCAATGAGATCAGC 634058 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||||||| || || | ||||| ||||| || | | || | | | Sbjct 634059 TCCATCCAATCAAAAGGGTTAGTCACATTGTATATCTTCCCGCACCCAAGCGCACCCAAC 634118 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | ||||| || ||||| | |||||| | |||||| || | ||||| |||| || Sbjct 634119 AACCTATCAGCCACAAACTCAATATACTGGCTCATCAGCTCTCGGTTCATCCCTACCAAA 634178 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTC-TGATATAAT 18908 ||| || || || | ||| || || || | ||||| || | || | Sbjct 634179 GCGCAAGGAAGCGCGTCGCATACAAACTCCCTCTCAATTTCCACTGCATCACGCACTATT 634238 Query 18909 AGATACAACTCTATCTTCATT-AGGAGGGTAT---AGAAGATGTTTAAACATCAAACATG 18964 | | || | || ||||| | | | | || ||| | | ||| || | Sbjct 634239 CCCTTC-ACACGCTCCTCATTCAACTTCTTCTTCAACAAACTGT----AGAGCAAGCACG 634293 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 | ||||| || || | |||||||||| ||||| || ||||| || ||||| || | Sbjct 634294 CGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGTTAATCCCG 634353 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATAC 19084 |||||| || | ||||||| ||| ||||| | ||| |||||| || ||||| | Sbjct 634354 GCATCAACCCGCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAAAAATATCC 634413 Query 19085 CTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCC--ATAACTAGCATCATTATTATGAAT 19142 | || || ||||||||| || ||||| || | | ||| ||| | || Sbjct 634414 CCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAAGACTCCGATC-----CGTCGAT 634468 Query 19143 CCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAA 19202 |||| ||| ||||| |||||||| || ||||| || | ||||| || | | ||| Sbjct 634469 CCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCGCGTGAAA 634528 Query 19203 TAGATACATAC-GCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTT 19261 || || || | ||| | |||||| | ||| | || | || | ||| ||||| | Sbjct 634529 TA-ATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTATACATCT 634587 Query 19262 CTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCT 19321 | || |||||||| || || || || ||||| || || ||| | || || | | | Sbjct 634588 CAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCAGAGACTT 634647 Query 19322 GTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 | || || || || ||| | || | | |||||| ||| || |||||| || ||| Sbjct 634648 GGACCTC-CTTCATAAAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGGCGGCA 634706 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCA 19440 || || || | ||||| || || ||||| ||||| ||||||| | | ||| | Sbjct 634707 AAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCCATTGG 634766 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 | ||||| ||||| ||| || || || | |||||||| || ||||| ||||| || Sbjct 634767 CGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTTTCTTG 634826 Query 19501 TACATGTTCCATATATCACGATATTGTATAGGAAATAT 19538 ||||| | |||||| | | ||||| || || || || Sbjct 634827 TACATTTCCCATATCTGTGGGTATTGGATTGGGAACAT 634864 >seq304 Length=2135540 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| ||| | || | |||||||| ||||||||| Sbjct 1419054 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAACATTGGAACAATACCA 1419113 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| |||||| || || | || | || || || || Sbjct 1419114 TTAGATGTTCCATTTGTTCCACGAATATAGCTGCCTGTGGCACGAATGTTGTGAACAGAG 1419173 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACAC-CGTTTAAGGGTATCATAAAT 48538 | ||| || || || || ||| || | ||||||| | ||||| |||||||| || Sbjct 1419174 ACACCAATTCCTCCAGCTGATTTGCTAATGACAGCACACTCCTTTAA-AGTATCATATAT 1419232 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 1419233 GCCTTCAATACTATCATCTTTCAT 1419256 Score = 82.4 bits (90), Expect = 9e-11 Identities = 115/156 (74%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACA 48163 || ||||| || || | || |||||||| || || | ||| | | | || |||||| | Sbjct 1418601 TCATATTTGGTGTACAGTTTTTCAAATTCTTCACCCCA-ACAATCTGCCAAACCAGGAGA 1418659 Query 48164 TTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATC 48223 |||||||| || | |||||||| | | ||| | ||| ||||| |||||||| ||| Sbjct 1418660 CTCATTAGGGCAAAATAATGACCATTGCCCATTACTTTGGACTCTTTCCATAAATAGATC 1418719 Query 48224 TGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTC 48258 || | |||||| || ||| ||||||||||||| || Sbjct 1418720 AGGCACCCAAAGTGC-ATAGAATAAATCCCTAGCTC 1418754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562066473207360