Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq6024 477 3e-130 seq135 84.2 6e-12 seq823 80.6 8e-11 >seq6024 Length=163856 Score = 477 bits (528), Expect = 3e-130 Identities = 702/986 (71%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861 || ||| | ||| | || || ||||| |||||||| || | |||||||| || || | Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 25862 ATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCAC 25919 ||||| |||| ||| | | | || ||| | ||| ||||| | || ||||| || |||| Sbjct 1452 ATGAT-CCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATTGCTGCAC 1395 Query 25920 CGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACA 25979 | || |||||||| ||||| || ||||| || ||||| || || || | || ||||||| Sbjct 1394 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACA 1335 Query 25980 ATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGA 26039 |||| || || || || | | || | ||| || || || | ||||||||||| | Sbjct 1334 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 1275 Query 26040 TCTGGGAAGCTGGCACAC-TGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATT 26098 | |||||||| |||| | | || || ||| ||||||||||||| || ||| | || ||| Sbjct 1274 TATGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATT 1216 Query 26099 ATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTAC 26158 | | || |||||| | || ||||| || || | |||||||||| || | Sbjct 1215 GTTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTC 1156 Query 26159 AGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTC 26218 | || || ||| | || ||||| |||||||||| |||| || | | || ||| Sbjct 1155 CGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACT 1096 Query 26219 GCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGT 26278 || || ||||| | ||||| | || ||||| || ||| |||||| |||||||| || Sbjct 1095 GCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 1036 Query 26279 ATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCAC 26338 |||||||||||||| ||||||||| | |||||||| || || || || || || |||||| Sbjct 1035 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAC 976 Query 26339 CCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCAC 26398 ||||| || ||| || || ||||| || ||||| || | || ||| ||||||||| Sbjct 975 CCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCAT 916 Query 26399 GGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTAT 26458 || ||||| || || | || ||||| ||||| | | || ||| | Sbjct 915 GGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 856 Query 26459 GGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTT 26518 || || | || || ||||| ||||| || |||||||| || || || || || || ||| Sbjct 855 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 796 Query 26519 GGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTT 26578 || |||| || || || ||||| ||||| || || |||||| | |||||||| | Sbjct 795 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 736 Query 26579 GCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTT 26638 ||| ||||||| || || || || ||| | || || | ||||| |||| ||||| || Sbjct 735 GCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 676 Query 26639 AACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCT 26698 |||||||||||||| || || ||||| || ||||| ||| | | || |||| | Sbjct 675 AACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAAT 616 Query 26699 ACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAAT 26758 || ||||||||| | | ||||| |||||||| || | ||||||||||| || |||||| Sbjct 615 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 556 Query 26759 GCTCATAACTTTCCACTTGACTTAGC 26784 ||||||||||| || || ||| |||| Sbjct 555 GCTCATAACTTCCCTCTAGACCTAGC 530 >seq135 Length=947859 Score = 84.2 bits (92), Expect = 6e-12 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 26260 TGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGA 26319 |||||| |||||| | || ||||| ||||||| ||||||||| | ||||||||||| || Sbjct 378306 TGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAAGCTGA 378247 Query 26320 ACATAATATACTCATGCACCCATT 26343 || || || || ||||||||||| Sbjct 378246 GCAGAACATCCTTATGCACCCATT 378223 >seq823 Length=108574 Score = 80.6 bits (88), Expect = 8e-11 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | || ||||| || ||||| || |||||||| ||||| || ||||| || ||| Sbjct 46644 TTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 46703 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAAC 26014 || || || || | || ||||||||||| || || || || | | || | ||| Sbjct 46704 TCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCG 46763 Query 26015 GCAATCGGACTACATTTTTACCCGATCTG 26043 || || || | ||||||||||| || || Sbjct 46764 GCTATAGGTTTGCATTTTTACCCAATATG 46792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146715903926976