Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq6024 536 4e-148 seq823 91.5 4e-14 seq102 80.6 8e-11 >seq6024 Length=163856 Score = 536 bits (594), Expect = 4e-148 Identities = 719/993 (72%), Gaps = 8/993 (1%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 526 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 585 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||||| ||| |||||||| || | || | || | |||||| || Sbjct 586 GTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 645 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || || || |||||||||||| | || | ||| || Sbjct 646 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 705 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | || ||||||||||| | ||||||||||||| || ||| || Sbjct 706 GAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 765 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| |||||||| | || ||||| || |||||||| || || || ||||| Sbjct 766 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 825 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| |||||| | || || | || ||||||| | || ||||| Sbjct 826 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 885 Query 36329 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385 | || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 886 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 942 Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445 |||||| || || || || | ||| || || || ||||||||||| ||||| || ||||| Sbjct 943 GAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1002 Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505 || |||| |||||| |||||||| || || || || ||||||||||||||||| || || Sbjct 1003 GAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCT 1062 Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565 ||||| |||| || |||| ||||| |||||| || ||||||||||| |||||||| Sbjct 1063 TCCTTGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1122 Query 36566 AGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAA 36625 || ||| ||||| || | |||||| || | ||||||||||||| | || |||| Sbjct 1123 TGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1182 Query 36626 GTAAGCTGAGATACCAA-TGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTAT 36684 |||| | | ||||| | ||||| || | ||||| || | ||| || || || || | Sbjct 1183 GTAACAAGCTACACCAAGTAAGAAA-TGTAGAACAATTAGCTCATAAGGACCGCCATTGT 1241 Query 36685 ATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGT 36744 ||||||| || || | || ||| |||||||| |||||||| || || | ||| || || Sbjct 1242 ATAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCG 1301 Query 36745 TCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGA 36804 || | || | || || ||||| || || ||||||||||| |||| | || || | Sbjct 1302 CAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGACCCAGAAA 1361 Query 36805 CAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATG 36864 |||| |||||||||||||| ||||| || ||||| ||||||| || || || | |||| Sbjct 1362 CAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCGATAATAAATA 1421 Query 36865 CTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGC 36924 | | ||| || || | | ||||||||| | || |||||||| || | || || | Sbjct 1422 CAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGAC 1481 Query 36925 GGTTGTTTGTACTTGTAACCCAGTCACATAAAC 36957 |||| | || || || | ||||| ||| |||| Sbjct 1482 GGTTTTCAGTGCTGGTTATCCAGTTACAGAAAC 1514 >seq823 Length=108574 Score = 91.5 bits (100), Expect = 4e-14 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 36714 CAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATG 36773 || |||||||| || || | ||| || || || | || | || || ||||| || Sbjct 46792 CATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATA 46733 Query 36774 ATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACG 36833 || ||||||||||| |||| | || || ||||| |||||||||||||| ||||| || Sbjct 46732 ATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCTACC 46673 Query 36834 GGAGGCGCAGCAACAAATGCAATTAAAAAT 36863 ||||| ||||||| || || || | |||| Sbjct 46672 GGAGGTGCAGCAATGAAAGCGATAATAAAT 46643 >seq102 Length=2022542 Score = 80.6 bits (88), Expect = 8e-11 Identities = 192/284 (68%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 36451 CAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTT 36510 ||| ||||| |||||||| | || || || ||||||||||||||| | || || |||| Sbjct 1592320 CAATCATAATGTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAAAAAAGCTTCCTT 1592261 Query 36511 GTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTA 36570 | |||| || |||| ||||| |||| | || || || ||| | |||||| | | Sbjct 1592260 GACCAATTGGATAGATCAAGAAAACAGTAGTAGCAACTATAATAGGAGTTGAATACGTAA 1592201 Query 36571 C-ACATATCCACGGCCTCATACCTAG--TCTATAACTAAGTTCCCATTGTCGTCCCAAGT 36627 | ||| ||||| || | ||||| || | |||||| || ||| | | |||| || Sbjct 1592200 CTACA-ATCCAAGGGCGCATACGCAGATGGAAAAACTAACTTTCCACTTAGGACCCATGT 1592142 Query 36628 AAGCTGAGATACCAA-TGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATAT 36686 || | | ||||| | ||||| | | ||||| || | ||| | || | || ||| Sbjct 1592141 AACAAGCTACACCAAGTAAGAAA-TATAGAACAATTAGCTCATAAGAACCATCATTGTAT 1592083 Query 36687 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTG 36730 || || || || | || ||||||| |||||||| || || Sbjct 1592082 AATCATTCATCAATAAATGATGCTTCCCGTATTGGGTAAAAATG 1592039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150443637244496