Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq6024 542 9e-150 seq823 91.5 4e-14 seq135 87.8 5e-13 >seq6024 Length=163856 Score = 542 bits (600), Expect = 9e-150 Identities = 717/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 526 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 585 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| |||||||| | | ||| ||||| || || | | ||| | ||||| || Sbjct 586 GTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 645 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || || || |||||||||||| || || | || || Sbjct 646 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 705 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 | ||| || | || || ||||||| ||| | ||||||||||||| ||| |||||| Sbjct 706 GAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 765 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| |||||||| | || ||||| || |||||||| || || || ||||| Sbjct 766 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 825 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 |||||||||||||| |||||| | || || | || ||| | | || ||||| Sbjct 826 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 885 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | ||| || || | |||||||||||| ||| | | || ||||| Sbjct 886 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 945 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| || || | |||||| || || ||||||||||| ||||| || |||||||| Sbjct 946 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1005 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||||||||| |||||||||||||| || ||||||||||||||| || ||||| Sbjct 1006 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 1065 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 || || | || || | || || || | |||| || || ||||| || |||||||||| Sbjct 1066 TTGACCAATTGGATAGATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGAATATG 1124 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 | || |||||| || ||||| || | | | ||||||||||||| | || |||| || Sbjct 1125 CAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 1184 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 || || | ||||| | ||| || | || | || | || || || |||||||| | Sbjct 1185 AACAAGCTACACCAAGTAAGAAATGTAGAACAATTAGCTCATAAGGACCGCCATTGTATA 1244 Query 5910 GCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTT 5967 ||||||||| | ||| || |||||||| || || || || || || || || || Sbjct 1245 ACCATTCATCAACGGAT--GCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGC 1302 Query 5968 GGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGAC 6027 || | || | || ||| || || || || ||||||||||| |||||||| || | || Sbjct 1303 AGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGACCCAGAAAC 1362 Query 6028 GGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGC 6087 |||||||| || || || || || || || |||||||| | ||| || | |||||| | Sbjct 1363 AGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCGATAATAAATAC 1422 Query 6088 AGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCG 6147 || ||||||||| || | | || ||||| || ||||||||||| || | || || || Sbjct 1423 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACG 1482 Query 6148 GTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||| | ||||| || | ||||| |||||| Sbjct 1483 GTTTTCAGTGCTGGTTATCCAGTTACAGAA 1512 >seq823 Length=108574 Score = 91.5 bits (100), Expect = 4e-14 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 5980 AACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTAT 6039 || ||| || || || || ||||||||||| |||||||| || | || |||||||| || Sbjct 46748 AATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCACGAAT 46689 Query 6040 GCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGT 6099 || || || || || || |||||||| | ||| || | |||||| ||| ||||||||| Sbjct 46688 ACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGT 46629 Query 6100 TAA 6102 || Sbjct 46628 CAA 46626 >seq135 Length=947859 Score = 87.8 bits (96), Expect = 5e-13 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 5629 CATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAA 5688 ||||| || || ||||||||||| || || || || |||||||| | ||||||||| || Sbjct 378216 CATGTAAAATGGGTGCATAAGGATGTTCTGCTCAGCTTGGAATACAATCATAAAGTTGAA 378275 Query 5689 AGTACCAGAGATACCAAGAGGCATACCATCA 5719 ||||| ||||| || | ||||||||||||| Sbjct 378276 AGTACTGGAGATTCCTATAGGCATACCATCA 378306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152638680210864