Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq6024 520 3e-143 seq823 91.5 4e-14 >seq6024 Length=163856 Score = 520 bits (576), Expect = 3e-143 Identities = 713/989 (72%), Gaps = 8/989 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 530 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 589 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| ||| |||||||| || | || | || | |||||| || || Sbjct 590 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 649 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| | || | ||| || | | Sbjct 650 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 709 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | ||||||||||||| ||| ||| || || Sbjct 710 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 769 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || || ||||| || Sbjct 770 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 829 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | || ||||||| | || ||||| | Sbjct 830 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 889 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| ||||| | || |||||| Sbjct 890 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAAT 946 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || || || | ||| || || || ||||||||||| ||||| || ||||| || Sbjct 947 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 1006 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| |||||| |||||||| || || || || ||||||||||||||||| || || ||| Sbjct 1007 ACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCT 1066 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || |||| || |||| ||||| |||||| || ||||||||||| |||||||| || Sbjct 1067 TGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 1126 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| ||||| || | ||| || || | ||||||||||||| | || |||| |||| Sbjct 1127 ACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAA 1186 Query 26110 GCTGAGATGCCGA-TGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAA 26168 | | || | | ||||| || | ||||| || | ||| || || || || || || Sbjct 1187 CAAGCTACACCAAGTAAGAAA-TGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 1245 Query 26169 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 26228 ||| || || | || ||| |||||||| |||||||| || || | ||| || || ||| Sbjct 1246 CCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGA 1305 Query 26229 TGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 26288 | || | || || || || || || ||||||||||| |||| | || || ||||| Sbjct 1306 AGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAGG 1365 Query 26289 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 26348 |||||||||||||| ||||| || ||||| ||||||| || || || | |||| | | Sbjct 1366 TTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCGATAATAAATACAGA 1425 Query 26349 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 26408 ||| || || | | ||||||||| | || |||||||| || | || || ||||| Sbjct 1426 AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1485 Query 26409 GTTTGTACTTGTAACCCAGTCACATAAAC 26437 | || || || | ||||| ||| |||| Sbjct 1486 TTCAGTGCTGGTTATCCAGTTACAGAAAC 1514 >seq823 Length=108574 Score = 91.5 bits (100), Expect = 4e-14 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 26194 CAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATG 26253 || |||||||| || || | ||| || || ||| | || | || || || || || Sbjct 46792 CATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATA 46733 Query 26254 ATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACG 26313 || ||||||||||| |||| | || || ||||| |||||||||||||| ||||| || Sbjct 46732 ATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCTACC 46673 Query 26314 GGAGGCGCAGCAACAAATGCAATTAAAAAT 26343 ||||| ||||||| || || || | |||| Sbjct 46672 GGAGGTGCAGCAATGAAAGCGATAATAAAT 46643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151982727137824