Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq33 141 1e-28 >seq33 Length=1871104 Score = 141 bits (156), Expect = 1e-28 Identities = 312/465 (67%), Gaps = 11/465 (2%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 || || || ||||| || || ||||| || |||| ||||| || ||||| || ||| Sbjct 634287 AAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGTT 634346 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 ||||| ||||| || || | ||||| | ||||||||| || |||| |||||| || Sbjct 634347 AATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAAA 634406 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || || || || || |||||| || ||||| | | |||||| ||| ||| Sbjct 634407 AATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAAG----ACTCCGATCC 634462 Query 37353 GAA-ATCCAtttttttGTCCAATCTGCCTTTAATTTA---ACACATTCAATTGTTTCAAT 37408 | |||||| | | ||| || |||||| ||| ||||| || || || || Sbjct 634463 GTCGATCCATCTCAAGGCCCACTCAGCCTTT---TTAGCCACACAAGGAACGGTCTCGAT 634519 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 || | || | || || || |||| | |||||||| || | || | ||| Sbjct 634520 CGCGTGAAATAATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACT 634579 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 |||||| |||||||||||||| ||||| || || ||||| ||||| ||| | ||| || Sbjct 634580 ATACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTC 634639 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 ||| | ||| || || || | ||| | || | ||||| ||| || |||||| Sbjct 634640 AGAGACTTGGACCTCCTTCATAAAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGA 634699 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 || |||||||| ||||| |||| ||| || ||| | ||||| Sbjct 634700 GGCGGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATC 634744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592272198544960