Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq100 98.7 8e-16 seq1476 93.3 3e-14 seq169 93.3 3e-14 seq1027 87.8 1e-12 seq167 87.8 1e-12 seq229 84.2 2e-11 seq707 82.4 6e-11 >seq100 Length=1654266 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || || |||||||| | | | |||| | || |||| ||| Sbjct 548142 ATGCAGAGTGGACTCCTTCTGGATGTTGTAATCTGCCAAAGTTCGGCCATCTTCCAGCTG 548083 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| || || | ||| || |||| ||||| ||||||||||| ||||| Sbjct 548082 CTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTT 548023 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || ||||||||||| || || || || || || Sbjct 548022 AGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCCAGGGTGATGGTCTTCCCTGT 547963 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || |||||||||||||| Sbjct 547962 CAAAGTCTTCACAAAAATCTGCAT 547939 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || || || | |||||| || || ||| ||| || || || ||||| || | Sbjct 547937 CCGCCTCTGAGACGAAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 547878 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| || ||||| || || | ||| || |||| |||| Sbjct 547877 AGGGTGCGGCCATCCTCAAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGGGGA 547818 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || ||| ||| Sbjct 547817 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCTATTGTGTCAGAGCTCTCTACC 547758 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||||||| || ||||| |||||||| Sbjct 547757 TCCAGGGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAGATCTGCAT 547711 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || || || | |||||| || || ||| ||| || || || ||||| || | Sbjct 555006 CCGCCTCTGAGACGAAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCA 554947 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || | || || | |||||| || ||||| || || | ||| || |||| |||| Sbjct 554946 AGGGTGCGGCCATCCTCAAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCCGGGGGA 554887 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| ||||| || ||| | | | || || ||| ||| Sbjct 554886 ATGCCCTCCTTGTCCTGGATCTTAGCCTTCACATTGTCTATTGTGTCAGAGCTCTCTACC 554827 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || |||||||| || ||||| |||||||| Sbjct 554826 TCCAGGGTGATGGTCTTCCCTGTCAAAGTCTTCACAAAGATCTGCAT 554780 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || || || |||||||| | | | |||| | || |||| ||| Sbjct 555211 ATGCAGAGTGGACTCCTTCTGGATGTTGTAATCTGCCAAAGTTCGGCCATCTTCCAGCTG 555152 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| || || | ||| || ||| ||||| ||||||||||| ||||| Sbjct 555151 CTTCCCTGCAAAGATGAGCCTCTGCTGGACCGGGGGAATTCCCTCCTTGTCCTGGATCTT 555092 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || ||||||||||| || || || || || || Sbjct 555091 AGCCTTCACATTGTCAATGGTATCAGAGCTCTCCACCTCCAGGGTGATGGTCTTCCCTGT 555032 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || |||||||||||||| Sbjct 555031 CAAAGTCTTCACAAAAATCTGCAT 555008 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || ||||| || | |||||| || || ||| ||| || || || ||||| || | Sbjct 547254 GCCACCTCTTAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 547195 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | ||| || || ||||| || || | ||| ||||| | ||| Sbjct 547194 AAGGGTACGGCCATCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGCTGATCTGGGGG 547135 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| |||||| | | | | ||||| |||||| Sbjct 547134 AATGCCCTCCTTGTCCTGGATCTTAGCTTTTACGTTATCAATGGTGTCTGAGCTCTCCAC 547075 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || || | || |||||||| || ||||| Sbjct 547074 TTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTTACAAAGATTTGCAT 547027 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || ||||| || | |||||| || || ||| ||| || || || ||||| || | Sbjct 554323 GCCACCTCTTAGACGTAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 554264 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || || | ||| || || ||||| || || | ||| ||||| | ||| Sbjct 554263 AAGGGTACGGCCATCCTCAAGCTGTTTGCCAGCAAAGATAAGCCTCTGCTGATCTGGGGG 554204 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| |||||| | | | | ||||| |||||| Sbjct 554203 AATGCCCTCCTTGTCCTGGATCTTAGCTTTTACGTTATCAATGGTGTCTGAGCTCTCCAC 554144 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || || || || || | || |||||||| || ||||| Sbjct 554143 TTCCAAAGTGATTGTCTTGCCAGTGAGTGTCTTTACAAAGATTTGCAT 554096 >seq1476 Length=5289327 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||||||||| | | | |||| | || |||| ||||||||||| || Sbjct 642786 TCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCCAGTTGCTTACCGGCGAAG 642845 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| | ||| || || | || | |||||||||||| ||| ||| || || | Sbjct 642846 ATCAGCCTCTGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATTTTTGCCTTCACGTTA 642905 Query 48696 CCCACAGACTCTGAC-GC-CTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTA 48753 | | || | | || || ||| ||||||| || || || ||||| ||||| || || | Sbjct 642906 TCAATAG--TGTCACTGCTCTCAACCTCCAGGGTGATGGTCTTTCCAGTCAAGGTCTTGA 642963 Query 48754 CAAAAATCTGCATC 48767 | |||||||||||| Sbjct 642964 CGAAAATCTGCATC 642977 >seq169 Length=810068 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||||||| ||||| | || | || | || ||||| ||||| || ||||| Sbjct 364577 TCTTTCTGAATATTATAATCTGCAAGTGTACGGCCATCCTCCAATTGCTTCCCAGCAAAA 364518 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||| | |||| || |||||||| ||| || |||||| | Sbjct 364517 ATAAGCCTCTGCTGATCAGGTGGAATTCCTTCCTTGTCCTGAATTTTAGCCTTTACATTA 364458 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||| | || || || ||||| ||||| || || ||| Sbjct 364457 TCAATTGTATCAGAACTCTCCACCTCTAAAGTGATGGTCTTTCCGGTCAATGTCTTAACA 364398 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 364397 AAAATCTGCAT 364387 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | |||| ||| || ||| |||||||| || || ||||| | ||| | || Sbjct 364376 AGCCGGAGAACCAGATGCAGAGTGGATTCTTTTTGGATGTTATAATCGGCAAGAGTCCGG 364317 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || |||| ||||| || || | |||| || ||| Sbjct 364316 CCATCCTCTAGCTGCTTTCCGGCGAAAATCAACCGCTGCTGGTCAGGTGGAATACCTTCC 364257 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | | ||||| |||||||||| || Sbjct 364256 TTGTCTTGAATTTTGGCTTTGACATTATCAATTGTATCTGAGCTTTCCACCTCCAAAGTT 364197 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||| || |||||||||||||| Sbjct 364196 ATAGTCTTGCCGGTGAGAGTCTTCACAAAAATCTGCAT 364159 >seq1027 Length=3367805 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| |||||| ||||| || || |||| || | ||| Sbjct 416163 AGGCGAAGCACCAAGTGGAGGGTGGACTCTTTCTGAATGTTATAGTCAGCATGAGTACGA 416222 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||| || || ||||| |||| | ||| || || | ||| | ||||||| Sbjct 416223 CCGTCCTCAAGCTGTTTCCCTGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCC 416282 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || ||| ||| | | | || || ||| || |||| ||| Sbjct 416283 TTGTCTTGAATTTTGGCTTTAACATTGTCAATGGTGTCAGAGCTCTCTACTTCCAAAGTA 416342 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | || || |||||||||||||| Sbjct 416343 ATGGTCTTCCCTGTGAGGGTCTTCACAAAAATCTGCAT 416380 >seq167 Length=3484751 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| | ||| ||| || ||||| ||||| |||| || | || Sbjct 1288384 AGACGAAGCACCAAATGCAAGGTGGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTGCGC 1288325 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||||||||| ||||| || || | ||| || || | ||||| |||||| Sbjct 1288324 CCATCCTCGAGCTGCTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATACCCTCC 1288265 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| ||| ||| | | | || || ||| ||||||| || Sbjct 1288264 TTGTCTTGGATCTTGGCTTTCACATTGTCAATGGTGTCAGAGCTCTCAACCTCCAAGGTG 1288205 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || || ||||| ||||| || ||||| Sbjct 1288204 ATGGTCTTGCCAGTTAAGGTTTTCACAAAGATTTGCAT 1288167 >seq229 Length=2021663 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || ||| ||| || ||||||||||| |||| ||| | || Sbjct 547645 AGGCGAAGCACCAAGTGGAGAGTGGACTCCTTCTGAATATTGTAGTCAGCAAGAGTGCGC 547704 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTC 48667 | || || | ||||||||| || || ||||| | ||| || || |||||| | ||||| Sbjct 547705 CCATCCTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGGTCAGGTGGGATC-CCCTC 547763 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 ||||| ||| ||| || ||| | | | ||||| |||||||| | || Sbjct 547764 TTTGTCCTGAATTTTTGCCTTAACATTGTCAATGGTGTCTGAGCTTTCCACCTCAAGGGT 547823 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | ||||| || || ||||||||| Sbjct 547824 GATTGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATC 547863 >seq707 Length=3952773 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || || ||| || || || |||||||| || | ||| | || Sbjct 1981728 AGACGAAGCACCAGGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGCAAGAGTGCGG 1981787 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| ||||| || ||||||||||| || || | || | ||| ||| Sbjct 1981788 CCATCCTCTAGCTGCTTTCCGGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATGCCTTCC 1981847 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || || | ||| ||||| | || Sbjct 1981848 TTGTCCTGGATCTTGGCCTTGACATTATCGATAGTATCAGAAGACTCAACCTCTAGGGTT 1981907 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || | ||||| || || |||||||| Sbjct 1981908 ATCGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCAT 1981945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380909632513752