Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq6024 578 4e-160 >seq6024 Length=163856 Score = 578 bits (640), Expect = 4e-160 Identities = 721/987 (73%), Gaps = 6/987 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| ||| || || | || | || ||||| ||||| |||||| Sbjct 1509 TGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 1450 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 |||||| || | | ||| | || || || || || |||||||| |||||||| Sbjct 1449 ATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCACCTCCG 1390 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | ||||||||| | || || || || ||||| ||||| || Sbjct 1389 GTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATT 1330 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || |||||||| | |||||| ||| ||||| ||| | || || || || || ||| Sbjct 1329 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGG 1270 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| ||| | ||||||| ||||| || ||||| || |||| | || | || | Sbjct 1269 GAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTA 1210 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 || ||| | | || | | ||| |||||| ||||||||||| || ||| | Sbjct 1209 CATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 1150 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 |||||||| |||||||| ||||||||| || || || || | || || ||||| Sbjct 1149 GGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 1090 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 |||||| ||||||| | |||||||| || ||||| | |||||||| || || ||| Sbjct 1089 TTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCT 1030 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| |||| ||| | || ||||| || |||||||||||||| |||||||| || Sbjct 1029 GGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTT 970 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || ||| | || || || ||||||||||| ||||| || || ||||||||||| ||||| Sbjct 969 CACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCC 910 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || || ||| | | ||||| ||||| || || | || || || | ||||| Sbjct 909 TTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 850 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | ||||| ||||| ||||| ||||| || || || || |||||||| || ||||| || Sbjct 849 AGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGA 790 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 ||||||||||| ||||| ||||||||| || ||||| | || |||||| | ||||| Sbjct 789 TTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCT 730 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | ||||| || | || ||||||||||| | ||| | |||||||| |||||||| Sbjct 729 TGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTA 670 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACT 163398 || |||||||| |||||||||||||| ||||| |||| || || ||| ||| Sbjct 669 AATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGT---GTAATTAATACC 613 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 ||||| ||||| ||||| | || |||||||||||||||||||| || ||||||||| Sbjct 612 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 553 Query 163459 CACAACTTCCCACTTGACCTTGCTGCT 163485 || |||||||| || ||||| |||||| Sbjct 552 CATAACTTCCCTCTAGACCTAGCTGCT 526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553043152714560