Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq6024 536 1e-147 seq169 109 6e-19 seq214 98.7 1e-15 seq318 82.4 9e-11 >seq6024 Length=163856 Score = 536 bits (594), Expect = 1e-147 Identities = 727/1008 (72%), Gaps = 4/1008 (0%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | || || || |||||||| || ||||| || || | || || Sbjct 37260 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 37319 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 || || ||| | ||| | || |||||| | || || ||| | ||||| || ||| Sbjct 37320 CCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGG 37379 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTCACAGCAGCTGT 164797 || |||||||| | ||| ||||||| | ||||| ||| ||||| | || || || || Sbjct 37380 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCAGT 37438 Query 164798 CTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 164857 || || |||||| || | | | |||||| | | |||| |||||||| || | || Sbjct 37439 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCACA 37498 Query 164858 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 ||| |||| || ||||| ||| | || || | |||| ||| || ||||||||||| Sbjct 37499 AGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCACGG 37558 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTAT 164977 ||| |||| ||||| ||||| ||| | || || ||||| || || || || || || Sbjct 37559 TGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA-TCCGTGCAAT 37617 Query 164978 C-CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 165036 || ||||| ||||| || || ||||||||||| |||||||||||||| || |||| Sbjct 37618 TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCC 37677 Query 165037 TTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 165096 | || || ||||| |||||||| |||||||||| || || ||||| || ||||| | Sbjct 37678 TGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCTA 37737 Query 165097 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATA 165156 | ||| ||||| | | || | ||||| || || |||||||| || ||||| || |||| Sbjct 37738 TATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATA 37797 Query 165157 TGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAG 165216 ||||||| ||||| || | || || | || |||||| ||||||||||| | || | Sbjct 37798 TGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTACTG 37857 Query 165217 TTGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGA 165276 | |||||||| |||| || ||||| || |||||||| || || ||| | | | Sbjct 37858 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 37917 Query 165277 CACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 165336 | || | ||||| |||||||| ||||| || || |||||||| ||||| || ||||| | Sbjct 37918 CTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTG 37977 Query 165337 GCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGG 165396 | |||| ||||| || || || ||| | ||||| || ||||| ||||| || || | | Sbjct 37978 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 38037 Query 165397 GTCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATT 165456 || | |||| || |||| | | ||||| ||||| || || ||||| || || | Sbjct 38038 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACT 38097 Query 165457 TCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAA 165516 |||| |||||||||| | ||||| |||||||| ||||||||||| |||||||| |||| Sbjct 38098 TCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACTAAAA 38157 Query 165517 ACATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAA 165576 | || || || || ||||| | ||||||||| |||| || ||||| || ||||||| Sbjct 38158 ATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 38217 Query 165577 ACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 || |||| ||||| || || || | || | || ||||| ||||||| Sbjct 38218 ACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 38265 Score = 524 bits (580), Expect = 9e-144 Identities = 711/989 (72%), Gaps = 2/989 (0%) Strand=Plus/Minus Query 162891 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 162950 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 1513 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1454 Query 162951 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 163009 |||||| || ||| | ||| | |||||| ||||| || || |||| ||| | ||||| | Sbjct 1453 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCAC 1395 Query 163010 CCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACA 163069 | || || || ||||| || || ||||| || || |||| || || | ||||| |||| Sbjct 1394 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACA 1335 Query 163070 ACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 163129 | || || |||||||| || |||| |||| || || ||| | || || || || | Sbjct 1334 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 1275 Query 163130 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 163189 | |||||||| ||||| ||||||| ||| | || || || ||||||| | || | | Sbjct 1274 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1215 Query 163190 TCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATATC 163249 | | || ||| | | || | | || ||||| ||||| ||||||||| | | Sbjct 1214 TTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1155 Query 163250 GCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCG 163309 | | ||||||||||| ||||| ||| ||||| || || ||||||||||| || | | Sbjct 1154 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1095 Query 163310 CAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCA 163369 | || ||| || ||||||| | |||||||| || ||||| | ||||| || || | Sbjct 1094 CTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 1035 Query 163370 TCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 163429 ||||||| || ||||||| ||| |||| ||||| || |||||||||||||| ||||||| Sbjct 1034 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 975 Query 163430 CCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTCTTCTCGGCAATGCATG 163489 | || || ||||| || || |||||||| ||||| || || || ||| || ||||||| Sbjct 974 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 915 Query 163490 GCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATG 163549 | | || |||||| | || | || || || |||| ||| || || | | Sbjct 914 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 855 Query 163550 GTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCG 163609 |||||| || |||||||| ||||| || || || ||||| || || ||||| || || | Sbjct 854 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 795 Query 163610 GTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTGG 163669 | || ||||||||||||||||| |||||||| | | | || |||||| | | Sbjct 794 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 735 Query 163670 CAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCA 163729 | || |||||||| || || || ||||| ||||| | || | ||||| ||||| |||| Sbjct 734 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 675 Query 163730 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACA 163789 |||| || |||||||| |||||||| ||| | ||||| |||| |||||||| | || | Sbjct 674 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATA 615 Query 163790 CTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACG 163849 | ||||| || | ||||||| ||| || |||||||||||||||||||| ||||| | Sbjct 614 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 555 Query 163850 CACACAACTTCCCACTCGATCTTGCTGCT 163878 | || |||||||| || || || |||||| Sbjct 554 CTCATAACTTCCCTCTAGACCTAGCTGCT 526 >seq169 Length=810068 Score = 109 bits (120), Expect = 6e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 164020 AACTCCTGAGGGAGAAACAGTTGTCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGC 164079 |||||| ||||| |||| ||| | | || || || |||||||| || ||||| Sbjct 97477 AACTCCAGAGGGTGAAAAAGTAATAGAATGCCCTGATGACGTGTACATTCTGGATGCAGC 97418 Query 164080 AGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCCTCATGTGC 164139 ||||||||||||||||| | ||||| ||| | || ||| ||||||| || ||||| Sbjct 97417 TGAAGAAGCAGGAGTTGACTTGCCATACTCATGTAGGGCAGGTTCTTGCTCTTCTTGTGC 97358 Query 164140 AGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGAT--CAGTCATTCCTAGACGATGAT 164197 ||| ||| ||||| ||| ||||||||| ||| ||| || || || ||||| Sbjct 97357 AGGGAAAGTTGTAGGAGGAGAGGTTGATCAGTCCGATGGTAGT--TTTCTTGATGATGAA 97300 Query 164198 CAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACATCTGAT 164248 || || | || || | || ||||| ||||| || ||||| || |||||| Sbjct 97299 CAAATGGAAGAGGGCTGGGTTCTTACTTGTGTTGCTTATCCCACTTCTGAT 97249 >seq214 Length=442246 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/212 (71%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 165021 TTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCC-GTC 165079 |||||| | | ||||| || || || ||||||||||| |||||||||| || || || Sbjct 75037 TTTGTC--CATATTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCAGT- 75093 Query 165080 CTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGAC 165139 ||||| || ||||| || ||| ||||| | | || | ||||| || | ||||| Sbjct 75094 -TTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTG--- 75149 Query 165140 CCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGC 165199 || ||||| || ||||| ||||| ||||| | | || || | || || || || Sbjct 75150 -CTGAACCCATTTCATATCATGGGGGTTGCCAGCGTATTAGGTGCTGCTCTGTAATGCGC 75208 Query 165200 TATTCATGGAGTCACAGTTGAAAATACATTAT 165231 ||||||||| | || || |||||||| |||| Sbjct 75209 TATTCATGGTGGTACTGTAGAAAATACTTTAT 75240 >seq318 Length=904506 Score = 82.4 bits (90), Expect = 9e-11 Identities = 139/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 164742 ACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTCTCG 164801 |||||||| | ||| ||||||| | |||||| |||||| | || | || || || Sbjct 515867 ACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGTAACTTCTTAACCACTGCAGTTTCT 515808 Query 164802 ACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 164861 || |||||| || | | | |||||| | | |||| |||||||| | | || ||| Sbjct 515807 ACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCAAAGCACAAGGG 515748 Query 164862 AATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCC 164921 |||| | || ||||| ||| | || | | |||| ||| || |||||||||||||| Sbjct 515747 GATTTACT-CGTTGGTGTCAATTAGGCGATTTGTGGACTTTTGTTGCTCTCCACGGTGCT 515689 Query 164922 TTCGCCCTAATTGGTTTCAT 164941 | | ||||||| ||| || Sbjct 515688 GTTGGACTAATTGTTTTTAT 515669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563167190317120