Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq6024 627 9e-175 seq456 136 4e-27 seq102 123 3e-23 seq135 105 7e-18 seq214 95.1 1e-14 >seq6024 Length=163856 Score = 627 bits (694), Expect = 9e-175 Identities = 708/946 (75%), Gaps = 2/946 (0%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGCTTCATTAC 8348 || |||||||| ||| | |||||||| || || ||| |||| || | || |||| Sbjct 1470 GGATGGTTTGGTGTTTTGATGATCCCTACT-TTATTGACCGCAACTTCTGTATTTATTAT 1412 Query 8349 CGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATC 8408 ||| ||| ||||||| ||||| || || || || || || || ||||| ||| |||| || Sbjct 1411 CGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTC 1352 Query 8409 TCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAATTGG 8468 ||| | || || ||||| || || |||||||| || |||| | ||| || || || Sbjct 1351 TCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGG 1292 Query 8469 CCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGG 8528 | || || ||||| || |||||||| || || ||||||| ||| | ||||| || || Sbjct 1291 TTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGG 1232 Query 8529 TCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGA 8588 |||||| |||| | ||| | || ||| | ||||| || | ||| ||||||||||| Sbjct 1231 TCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGA 1172 Query 8589 ATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCTCC 8648 ||||||||| || ||| || || ||||| |||||||| ||||||||| || ||||| Sbjct 1171 GTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCC 1112 Query 8649 TGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGA 8708 |||||| |||||| ||||||| ||| | ||||||| |||||||||| || ||||| Sbjct 1111 TGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGA 1052 Query 8709 TGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGAGCA 8768 |||||||||||| || ||||| ||||| ||||||| |||| |||| |||||||||||||| Sbjct 1051 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCA 992 Query 8769 CAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATCTCT 8828 ||||||||| |||||||| || |||||| | || || |||||||| |||||||| || || Sbjct 991 CAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCT 932 Query 8829 CTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAC 8888 || || ||||||||||| | || || ||| || | | || ||||| |||| Sbjct 931 ATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAA 872 Query 8889 CGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGTTGC 8948 || ||| || | || |||| ||||||||||| || |||||||| || || || || Sbjct 871 TGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGC 812 Query 8949 CGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAG 9008 ||||||||| || ||||| || ||||||||||||||||| ||| ||||||||| | Sbjct 811 CGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 752 Query 9009 CTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCTCGGCGT 9068 || ||||||||| | ||||| |||||||| || || || ||||| || || | || | Sbjct 751 TTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTAT 692 Query 9069 CTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGACGGACA 9128 || |||||||||||||| ||||| ||||| |||||||| ||| | | || | || Sbjct 691 TAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCA 632 Query 9129 AGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTATGGAAGT 9188 ||| || || | || |||||||| || | ||||||| || || ||||||||||| Sbjct 631 AGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGT 572 Query 9189 CATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCT 9234 ||||| ||| | || || || |||||||| || ||||| || ||| Sbjct 571 TATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 542 bits (600), Expect = 3e-149 Identities = 721/999 (72%), Gaps = 2/999 (0%) Strand=Plus/Plus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGA 9874 ||||| || | ||||||||| | | || || || |||||||| |||||||| || Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 9875 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTT 9934 ||| | || ||||| || ||| | || | || || ||| | || || || || ||| Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 9935 GTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGG-TGCTAATTTCCT 9993 || || ||||| || || ||| | || ||| || | || || ||| || ||| | Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AACTTCTT 37426 Query 9994 TACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 10053 || || || || || || |||||| || | | | |||||| | | |||| ||||| Sbjct 37427 AACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGG 37486 Query 10054 TCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGT 10113 ||| || | || || ||||| || ||| || | || || | ||| ||||||| Sbjct 37487 TCCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGT 37546 Query 10114 GGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAG 10173 || |||||||| || |||| |||| || ||||||||||| || ||||| || || | Sbjct 37547 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 37606 Query 10174 ATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGT 10233 || | | | |||||||| ||||| ||||| || ||||| || |||||||||||||| Sbjct 37607 ATCCGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGT 37666 Query 10234 CAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGG 10293 ||| ||||| || |||||||| || |||||| ||||||| |||||||| ||||| || Sbjct 37667 TTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGG 37726 Query 10294 CGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 10353 || || || || || || ||| | ||||| |||| || |||||||| |||||||| || Sbjct 37727 TGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAA 37786 Query 10354 TCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCA 10413 || || ||||||||||| ||||| || || | || | || || |||| || || || Sbjct 37787 CCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCA 37846 Query 10414 CGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGC 10473 || | ||||||||||| || | | | ||||||| || ||||| || ||| || Sbjct 37847 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 37906 Query 10474 TTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 10533 |||| | ||||||| ||||| || ||||| |||||||| |||||||| || ||||| Sbjct 37907 TTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTC 37966 Query 10534 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 10593 ||| || ||||| |||||||| ||||||||| ||| | |||||||||||| | ||||| Sbjct 37967 CCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGT 38026 Query 10594 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 10653 ||| || | ||| | |||| | || ||||| | | ||||| ||||| ||||| || Sbjct 38027 ACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACG 38086 Query 10654 TGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 10713 ||| || || || || ||||| |||||| | || | |||||||||||||||||||| || Sbjct 38087 TGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTT 38146 Query 10714 CTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCA 10773 ||| || || ||||| || | ||||||||| ||||||| |||||||| | || || Sbjct 38147 CTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCA 38206 Query 10774 ACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || || |||| | || | ||||| || || ||||| || Sbjct 38207 GCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 38245 >seq456 Length=400266 Score = 136 bits (150), Expect = 4e-27 Identities = 301/441 (68%), Gaps = 24/441 (5%) Strand=Plus/Minus Query 10304 ATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCAT 10363 || || || ||| | |||| |||| | ||| |||| | || | | || || || ||| Sbjct 321052 ATATTTCGATTCATCTTCTTTTTCCAAGAGTTTTATAACTAGATGTTGAACCCATTTCAT 320993 Query 10364 ATGATGGGAGTTGCTGGTATACTGGGAGGGGC---GCTC--CTATCAGCAATCCACGGAG 10418 |||| ||||||||| || ||| || |||| |||| |||| | || || | | Sbjct 320992 ATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTGCTATGCACTATTCATAGTG 320933 Query 10419 TCACTGTAGAAAACACACTTTATC--AAGATGGCGAACAAGCAAACACTTT-CAAAGCTT 10475 | | ||||||||| || |||||| ||||||| || | ||||||||| || | ||| Sbjct 320932 TTATTGTAGAAAAGAC--TTTATCTGAAGATGGTGATGGTGTAAACACTTTGCATACCTT 320875 Query 10476 TTGATAGCA-CTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCC 10534 | | | || ||||| ||||| || ||||| | || ||||| |||| || ||||| Sbjct 320874 T--AAACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCCAACCACTTTTGGTCT 320817 Query 10535 CAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTA 10594 || || |||||| |||||||| |||||| | || | ||||||||||| | | | || Sbjct 320816 CAAATCTTTGGA-TTGCTTTTTCTAATAAATGTTGATTATATTTCTTTATGTTATCTATA 320758 Query 10595 CCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGT 10654 || || || | | | | || | || || |||| | | | | || ||||||| || Sbjct 320757 CCAGTAATCGATTTATAGATGAGTGCTCTTAGAATAGTCGATTTGACTTTCAATCTATGT 320698 Query 10655 GCTTACGATTTTGTATCTCAAGAGATC----AGGGCGTCAGAAGATCCTGAATTTGAGAC 10710 || || || |||| |||||||| ||| || | ||| |||||||| || |||| Sbjct 320697 GCCTATGACTTTGCTTCTCAAGAAATCTATAAGAG-----GAAAATCCTGAA-TTCAGAC 320644 Query 10711 GTTCTATACGAAGAATATCCT 10731 ||||| || || ||||| || Sbjct 320643 TTTCTACACTAAAAATATTCT 320623 >seq102 Length=2022542 Score = 123 bits (136), Expect = 3e-23 Identities = 206/294 (70%), Gaps = 4/294 (1%) Strand=Plus/Plus Query 8473 CACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGGTGGTCCT 8532 || || ||||| || ||||||| | | | ||||||| || | ||||| | |||| || Sbjct 1592039 CATTTTTACCCAATACGGGAAGCATCATTTATTGATGAATGATTATACAATGATGGTTCT 1592098 Query 8533 TACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCGTGAATGG 8592 || |||| | ||| | | ||| | ||||| || | ||| ||||||| | | ||| Sbjct 1592099 TATGAGCTAATTGTTCTATATTTCTTACTTGGTGTAGCTTGTTACATGGGTCCTAAGTGG 1592158 Query 8593 GAACTT--TCTTACCGCCTTGGCATGCGTCCTTGGATCTGT-GTTGCATACTCTGCTCCT 8649 || || | || || || | ||||| |||||||| ||| ||| | || || ||||| Sbjct 1592159 AAAGTTAGTTTTTCCATCTGCGTATGCGCCCTTGGAT-TGTAGTTACGTATTCAACTCCT 1592217 Query 8650 GTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTCTGAT 8709 || | |||| || |||| ||| | ||||||| |||||||||| || | |||| Sbjct 1592218 ATTATAGTTGCTACTACTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTTTGAT 1592277 Query 8710 GGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCT 8763 ||||||||||| || ||||| |||| |||||| |||| ||| || || ||| Sbjct 1592278 GGTATGCCTCTAGGAATCTCTAGTACTTTCAACATTATGATTGCATTGCAAGCT 1592331 >seq135 Length=947859 Score = 105 bits (116), Expect = 7e-18 Identities = 81/96 (84%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 8701 TTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAG 8760 || ||||||||||||||| | || |||||| |||| ||||||| |||| |||| ||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 8761 GCTGAGCACAACATCCTGATGCACCCCTTCCACATG 8796 |||||||| |||||||| |||||||| || ||||| Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATTTTACATG 378216 >seq214 Length=442246 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 7/201 (3%) Strand=Plus/Plus Query 10241 TTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCG 10300 ||||| || ||||| || || |||||| ||||||| |||||||| ||||| || || || Sbjct 75047 TTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCC-AGTTTTGGTGTAGCA 75105 Query 10301 GCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTC 10360 || || || || ||| | ||||| |||| || ||| |||| || || || || || Sbjct 75106 GCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTG----CTGAACCCATTT 75161 Query 10361 CATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTC 10420 ||||| ||||| ||||| | || | || | || || || || || || || | Sbjct 75162 CATATCATGGGGGTTGCCAGCGTATTAGGTGCTGCTCTGTAATGCGCTATTCATGGTGGT 75221 Query 10421 ACTGTAGAAAACACACTTTAT 10441 |||||||||| | ||||||| Sbjct 75222 ACTGTAGAAA--ATACTTTAT 75240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516441109056000