Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq100 89.7 4e-13 seq271 87.8 2e-12 seq813 82.4 6e-11 seq54 82.4 6e-11 >seq100 Length=1654266 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 28545 TGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACG 28604 |||| | | |||||||| ||||| ||||| | || || || ||||| ||| || | Sbjct 546790 TGTGAATAGATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTG 546849 Query 28605 GAACCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGA-GGGAGTGC 28662 ||| ||||| || | | | | | || || |||| || ||||| || |||| | | Sbjct 546850 GAAAGCTCAGACACTATTGACAACGTAAAAGCCAAAATTCAG-GACAAGGAAGGGATTCC 546908 Query 28663 CCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 28722 || | ||||| ||||| | |||||||| |||||||| ||||||||| || | | Sbjct 546909 CCCT-GATCAGCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTTG 546967 Query 28723 CCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 | || |||||||||||||| || || || || ||| |||| Sbjct 546968 CGGACTATAACATTCAAAAGGAGTCAACCCTCCACTTGGT 547007 Score = 89.7 bits (98), Expect = 4e-13 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 28545 TGTGTAAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACG 28604 |||| | | |||||||| ||||| ||||| | || || || ||||| ||| || | Sbjct 553859 TGTGAATAGATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTG 553918 Query 28605 GAACCTTCAGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGA-GGGAGTGC 28662 ||| ||||| || | | | | | || || |||| || ||||| || |||| | | Sbjct 553919 GAAAGCTCAGACACTATTGACAACGTAAAAGCCAAAATTCAG-GACAAGGAAGGGATTCC 553977 Query 28663 CCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 28722 || | ||||| ||||| | |||||||| |||||||| ||||||||| || | | Sbjct 553978 CCCT-GATCAGCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTTG 554036 Query 28723 CCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 | || |||||||||||||| || || || || ||| |||| Sbjct 554037 CGGACTATAACATTCAAAAGGAGTCAACCCTCCACTTGGT 554076 >seq271 Length=609135 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||| ||| | || ||||| || ||||||||||||||| || |||| | || ||| Sbjct 324178 GATCAACAAAGATTGATTTTTGCTGGTAAACAATTGGAAGATGGTAGAACTCTTGCAGAT 324119 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || || || || || ||||| ||||| ||| |||| || || | ||||||| Sbjct 324118 TACAATATCCAGAAGGAATCAACTCTTCACTTGGTTTTGAGGCTTAGAGGAGG 324066 >seq813 Length=767751 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||| | || ||||| ||||| |||||||||||| |||| | || ||| Sbjct 436399 GATCAGCAGAGATTGATTTTTGCTGGCAAGCAATTGGAAGATGGCCGAACTCTTGCTGAT 436340 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||||| || ||||| || || ||| |||| | || | ||||||| Sbjct 436339 TATAACATTCAGAAGGAATCAACACTTCACCTGGTTCTGAGGCTTAGAGGAGG 436287 >seq54 Length=3626826 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||| | || ||| | ||||| ||||||||||||| |||| | || ||| Sbjct 3012188 GATCAGCAGAGATTGATTTTTCCTGGCAAGCAATTGGAAGATTGCCGAACTGTTGCTGAT 3012247 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||||||||| || ||||| || || ||| |||| | || | ||||||| Sbjct 3012248 TATAACATTCAGAAGGAATCAACACTTCACCTGGTTCTGAGGCTTAGAGGAGG 3012300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425373567843096