Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq6024 542 9e-150 seq823 96.9 1e-15 seq135 80.6 8e-11 >seq6024 Length=163856 Score = 542 bits (600), Expect = 9e-150 Identities = 723/992 (73%), Gaps = 12/992 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 529 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 588 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || | ||| | | || | ||| Sbjct 589 AGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGA 648 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || |||||||||||| || || | || || | Sbjct 649 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAA 708 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || ||||||||||| ||||||||||||| | | |||||| || Sbjct 709 CCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 768 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| |||||||| | || ||||| || |||||||| || || |||||||| || Sbjct 769 ACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGT 828 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||| ||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 829 TTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 888 Query 18194 AAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 || || | |||| || |||| || ||||||||| ||||| | || ||||| Sbjct 889 GATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAA 945 Query 18251 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAA 18310 ||| || || || || | ||| || || || ||||||||||| ||||| || || ||||| Sbjct 946 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1005 Query 18311 TACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCC 18370 ||| | ||| || ||||||||||| || || ||||||||||||||||| || || || Sbjct 1006 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 1065 Query 18371 TTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAA 18428 ||| |||| ||||| | | ||||| || | || | |||||||| || || || ||||| Sbjct 1066 TTGACCAATTGGATAGATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAATAT 1123 Query 18429 GCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATG 18488 |||||| |||||| ||||||||||| || | ||||||||||||| | || |||||| Sbjct 1124 GCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATG 1183 Query 18489 TAAGCTGCGATGCCGA-TGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATA 18547 ||| || | || | | ||||| || | ||||| || | ||| || || || || || Sbjct 1184 TAACAAGCTACACCAAGTAAGAAA-TGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 1242 Query 18548 TAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTT 18607 |||||| || || | || ||| |||||||| |||||||| || || | ||| || || Sbjct 1243 TAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGC 1302 Query 18608 AGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGAC 18667 ||| | || | || || || || || || ||||||||||| |||| | || || || Sbjct 1303 AGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGACCCAGAAAC 1362 Query 18668 AGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGC 18727 ||| |||||||||||||| || || || ||||| ||||||| || || || | |||| | Sbjct 1363 AGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCGATAATAAATAC 1422 Query 18728 TGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCG 18787 | || |||||| || | | ||||||||| | || |||||||| || | ||| || || Sbjct 1423 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACG 1482 Query 18788 GTTGTTTGTACTCGTAACCCAGTCACATAAAC 18819 ||| | || || || | ||||| ||| |||| Sbjct 1483 GTTTTCAGTGCTGGTTATCCAGTTACAGAAAC 1514 >seq823 Length=108574 Score = 96.9 bits (106), Expect = 1e-15 Identities = 128/178 (72%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 18576 CAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATG 18635 || |||||||| || || | ||| || || ||| | || | || || || || || Sbjct 46792 CATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATA 46733 Query 18636 ATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACG 18695 || ||||||||||| |||| | || || ||||| |||||||||||||| || || || Sbjct 46732 ATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCTACC 46673 Query 18696 GGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGA 18753 ||||| ||||||| || || || | |||| | | || |||||| || | | ||||| Sbjct 46672 GGAGGTGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGA 46615 >seq135 Length=947859 Score = 80.6 bits (88), Expect = 8e-11 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 18276 AACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCG 18335 || || ||||||||||| || || || ||||||||||| | ||| || |||||||||| | Sbjct 378223 AATGGGTGCATAAGGATGTTCTGCTCAGCTTGGAATACAATCATAAAGTTGAAAGTACTG 378282 Query 18336 CTAATACCAAGAGGCATACCATCAGAGAA 18364 || || | ||||||||||||||| || Sbjct 378283 GAGATTCCTATAGGCATACCATCAGAAAA 378311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151307575438256