Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq6024 556 2e-153 seq456 172 7e-38 seq662 131 2e-25 seq84 91.5 2e-13 >seq6024 Length=163856 Score = 556 bits (616), Expect = 2e-153 Identities = 698/962 (73%), Gaps = 4/962 (0%) Strand=Plus/Plus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 |||||| ||||| || |||||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 526 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 585 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 ||| ||||| | || || |||||||| || | |||||||| |||| ||||| | Sbjct 586 GTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 645 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 ||| |||||||| ||||| || || |||||||| ||||| ||||||| ||| | || || Sbjct 646 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 705 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 |||||| ||||| ||||| || | || ||||| Sbjct 706 GAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 765 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 ||| || |||||||||||||| || || || |||||||||||||||||||| || || Sbjct 766 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 825 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 || ||||||||||| ||||| ||||||| | || ||||||| |||| || || || Sbjct 826 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 885 Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | || | | | | || || || | ||||| |||||||||||||| || ||||| |||| Sbjct 886 CCTGATCAAACTA-GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGA 944 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 | || ||||| ||||| | |||||| || |||||||| || ||||| || || || |||| Sbjct 945 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 1004 Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709 | || | ||| ||||||| || || || || || | ||||||| |||| || || | Sbjct 1005 ATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTC 1064 Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769 ||||||||| || |||| |||||| || || | ||||| ||||||||||| || |||| Sbjct 1065 CTTGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATG 1124 Query 103770 CGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATAT 103829 | ||| ||||| |||||||| ||||||||| | | |||||||||||| ||||| | Sbjct 1125 CAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGT 1184 Query 103830 ATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTATACA 103889 | | | |||| | ||| || | || | || | ||||||| || || || | Sbjct 1185 AACAAGCTACACCAAGTAAGAAATGTAGAACAATTAGCTCATAAGGACCGCCATTGTATA 1244 Query 103890 GCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGTTGG 103949 ||| ||||||| ||||| |||||||| || || || || || | ||| || || | Sbjct 1245 ACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAG 1304 Query 103950 AGGAGGGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGCGACGG 104009 | | |||| || |||||||| || || ||||| || || | || || |||| || | Sbjct 1305 AAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAG 1364 Query 104010 GTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA-GCAG 104068 |||||||||| || || ||||| || |||||||| || | |||||| | || || ||| Sbjct 1365 GTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCGATAATAAATACAG 1424 Query 104069 ATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGAGACGG 104128 | ||||| | ||| | ||| |||||||||| ||||| ||||| |||| || |||||| Sbjct 1425 A-AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGG 1483 Query 104129 TT 104130 || Sbjct 1484 TT 1485 Score = 556 bits (616), Expect = 2e-153 Identities = 738/1018 (72%), Gaps = 10/1018 (1%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 38260 AGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 38201 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || || || || || |||||||| ||| Sbjct 38200 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTAGTGTAGAAAGTC 38141 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | |||||| || || || |||||||| ||||| || Sbjct 38140 TCAAATTCAGGATCTTCCGCTGCACGGATCTCCTGAGAAACGAAGTCATAGGCACGTAGA 38081 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || ||||| ||||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 38080 TTCAGAGCCAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 38021 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||||||||| ||||| Sbjct 38020 AACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAA 37961 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || ||||||||||||||||| ||||| |||| || | | || || | Sbjct 37960 AAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGG 37901 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||||| |||| || || Sbjct 37900 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 37841 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | || | | || ||||| ||||||||||| |||||||| ||| Sbjct 37840 GCGCATAGCAGAGCAGCACCTAATACGCCGGCAACCCCCATCATATGAAATGGGTTCAGC 37781 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||||||||| || || || | ||||| | ||||| |||||| ||||| |||||||| Sbjct 37780 GTCCAGTTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACACCAAAA 37721 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||| ||||||| ||||| || || ||||| || || || ||| |||||| Sbjct 37720 CTAGGCGCAAAAAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAACAAAA 37661 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACG-AATTCCAATTAACCTAGC 102368 ||||| || || |||||||| || || ||||| || || || |||| || | | ||| Sbjct 37660 ACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGCACGGATCG-AGC 37602 Query 102369 CAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAA 102428 | || |||||||| | ||| ||||| || || | || |||||||||||||| ||||| Sbjct 37601 AAGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCACCGTGGAGAGCAACAAA 37542 Query 102429 AGCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCA 102488 || ||| | || || | ||| ||| | ||||| ||||| ||||| |||||||| Sbjct 37541 AGTCCACAAACCGCCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCGGGACCCCA 37482 Query 102489 AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAA 102548 |||| | | |||||| | | | | |||||| || || || ||||| || | ||| Sbjct 37481 TAGTAATAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCGGTTAAGAA 37422 Query 102549 ATTAGCA-CCTTC---AAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAA 102604 || ||| ||||| | | ||||| || | || ||||||||||| || || ||| Sbjct 37421 GTT-GCAGCCTTCCAAATAGGAACTA---GCCAATCCATGGGTATACCATGAGGTTACAA 37366 Query 102605 ACGTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTC 102664 | || || || || | ||| ||||| | |||| ||| || ||||| || | ||| | Sbjct 37365 AGGTTGTACCTGTGAACCAACCCCCTAAGGCGAAATAGGCGCAAGGAAAGAGCAATAGAC 37306 Query 102665 CAGACCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 | |||||||| ||||| || || || || | | ||||||||||| || ||||| Sbjct 37305 CGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCATAATATCAAA 37248 >seq456 Length=400266 Score = 172 bits (190), Expect = 7e-38 Identities = 324/471 (69%), Gaps = 8/471 (2%) Strand=Plus/Plus Query 101803 AATAGGATGTTCTTTGTGTAGAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCT 101862 || || || || || |||||||| |||| ||| || |||| ||| || | ||| ||| Sbjct 320620 AAGAGAATATTTTTAGTGTAGAAAGTCT-GAATTCAGGATTTTCCTCTTATA-GATTTCT 320677 Query 101863 TGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTT 101922 || || |||||||||| |||| || |||| || | | | | || | | | ||| Sbjct 320678 TGAGAAGCAAAGTCATAGGCACATAGATTGAAAGTCAAATCGACTATTCTAAGAGCACTC 320737 Query 101923 GTCCACAGACCCATAACAGGAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTA 101982 || | | | | || || || | | | | ||||||||||| || || | |||||| | Sbjct 320738 ATCTATAAATCGATTACTGGTATAGATAACATAAAGAAATATAATCAACATTTATTAGAA 320797 Query 101983 AATGCAATACCAAAGATTTGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCT 102042 || ||||| ||||||||||||||||| || |||| || || || | ||||||||| ||| Sbjct 320798 AAAGCAAT-CCAAAGATTTGAGACCAAAAGTGGTTGGCAGTGACGACTGAATAAGTTTCT 320856 Query 102043 TCCTCTTGTGTGGAATCGAATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGA 102102 || ||| || | | || | | ||||||||| | ||||||||||||| | | | Sbjct 320857 TCAGATTGAGTTGGTTTAAAGGTATGCAAAGTGTTTACACCATCACCATCTTCAGATAAA 320916 Query 102103 GTGTTCTCCACAGTGACACCGTGGAT--TGC---TGACAGCAGTGCTCCTCCCAGGATAC 102157 || || || ||| | |||| || || ||| | |||||||| | || || | Sbjct 320917 GTCTTTTCTACAATAACACTATGAATAGTGCATAGCAGAGCAGTGCCCAATACAATATGC 320976 Query 102158 CTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAAGA 102217 | ||||| ||| ||||||| |||||||| | | || |||||| || | || | |||| Sbjct 320977 CGGCAACTCCCGTCATATGAAATGGGTTCAACATCTAGTTATAAAACTCTTGGAAAAAGA 321036 Query 102218 GTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAAC 102268 | ||||| |||||| | ||| |||| ||| || || ||| || |||| Sbjct 321037 AGATGAATCGAAATATAGTTGCTACACAAAAGGAAAGCATAAAAAATCAAC 321087 >seq662 Length=431101 Score = 131 bits (144), Expect = 2e-25 Identities = 146/195 (75%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 102814 ATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATC 102873 ||| ||||||||||||| || || ||||| | | |||| ||| | ||||| ||||| Sbjct 315274 ATCTGAAGTTGGGTATGAAACACAAGTCAGCAAATAACCGTCTTTCATTTGATTCTCATC 315215 Query 102874 CAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGA 102933 ||| || || ||| |||||||| | ||| || | ||||| |||||||||||||| Sbjct 315214 CAGGAACGAACCATCAGACTGATCTACCGAACCTGACACCATCTTCCCAGCACAAGTAGA 315155 Query 102934 ACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAG 102993 || || ||||| | || ||||| || || ||||| || ||||| |||||||| ||||| Sbjct 315154 GCAAGCCCCAGCCCTGCAAGAATAGGGAAGCTCAACTCCAGCTTCCTCAGCAGCATCTAG 315095 Query 102994 AATATATTGATCATC 103008 || ||| |||||| Sbjct 315094 GATGTATGTATCATC 315080 >seq84 Length=594450 Score = 91.5 bits (100), Expect = 2e-13 Identities = 165/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 102775 TTAGTAGAG-TGATTCTTCTTGTTCTGTCAGGACTACCACA-TCCGAAGTTGGGTATGCC 102832 ||||||||| | | ||| ||||| || | || || || | || |||||||| |||| Sbjct 371570 TTAGTAGAGATCACTCTCCTTGTGA-GT-ACGAATAACAGAGTCTGAAGTTGGATATGAG 371627 Query 102833 ACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGATTGATCTTCT 102892 || ||||| || ||| | ||| || | ||| || || ||| || || |||| | Sbjct 371628 ACACAGGTAAGTACATATCCTTTCTCCATTTGCTCTTCGCTCAGGAATGACCCATCTGAT 371687 Query 102893 TGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCAGCACGACAG 102952 || ||||||| || || | | || |||||||||||||| || || || || | ||| Sbjct 371688 TGGTCTACAGATCCAGAAACCAGCTGCCCAGCACAAGTAGAGCAGGCCCCTGCCCTACAT 371747 Query 102953 GAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTGATCATC 103008 || |||||||| || | ||||| | ||||||| ||| || || || |||||| Sbjct 371748 GAGTAAGGCAGTTCTATTCCTGCATTTTCAGCAGAGTCAAGGATGTAAGTATCATC 371803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633465896425920