Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq6024 520 1e-142 seq353 109 6e-19 seq135 93.3 5e-14 >seq6024 Length=163856 Score = 520 bits (576), Expect = 1e-142 Identities = 712/987 (72%), Gaps = 8/987 (1%) Strand=Plus/Plus Query 124049 GCTAGGTCTAGTGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCCAAGTTT 124108 ||||||||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 530 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 589 Query 124109 GCTCTGTTTAGAACATCACCCCATGTTGGGACGATTTTTCCGTTAGCATCAACAACTGAT 124168 || | ||| | || |||| |||| || | | || | | |||||| || ||| Sbjct 590 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 649 Query 124169 TGGTTAAAGTTGAAACCATTCAAGTTGAATGCCATTGTGCAGATACCCATAGAGGTTAAC 124228 ||||| || ||||||||||| | |||||| ||||| |||| ||||| | || || ||| Sbjct 650 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 709 Query 124229 CATACACATACAACAGGGAAAACTGCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAT 124288 || | || ||| ||||| || | |||| |||||| || | | | || |||||||| Sbjct 710 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 769 Query 124289 GAAGCATACTGGAAGATAAGACGACCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTT 124348 |||||| |||||||| | || ||||| ||||| || || ||||| || || || ||| Sbjct 770 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 829 Query 124349 TCTTCTTCTTGTCCGAACTTATAACCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTG 124408 ||||| ||||| ||||| | ||||| | || || || | ||||| ||||| ||| Sbjct 830 TCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 889 Query 124409 ATTAGAGAAGATGTAACAAGAGAACCATGCATTGCTGAGAATAAAGATCCTCCGAACATT 124468 || | | ||| || || | ||||||||||| || ||||| || || ||||| | Sbjct 890 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 949 Query 124469 CCTGCTACTCCTGCCATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACG 124528 || ||||| ||| |||||| || || ||||| || ||||| ||||| || ||||| || Sbjct 950 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 1009 Query 124529 AACATAAAGTTGAAAGTACCTGAGATACCAAGTGGCATACCATCAGAGAATGAACCCTGA 124588 | |||||||||||||||||| ||||| || || |||||||||||||| || || ||| Sbjct 1010 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGA 1069 Query 124589 CCAAATGGGTATACTAAGAATACAGCGAATGCAGCAGATACTGGTGCTGAATAAGCAACA 124648 |||| ||| || | ||||| ||||| ||||| | || || |||||||| |||||| Sbjct 1070 CCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 1129 Query 124649 CAGATCCAAGGACGCATTCCTAATCTGTATGATAGTTCCCACTGTCTTCCCATGTATGCT 124708 |||||||| ||||| || | | | | |||||||||| | |||||||| Sbjct 1130 GCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTAACAA 1189 Query 124709 GAAATACCAA-TAAGGAA-GTGGAA-AATTACCAACTGATAAGGACCACCATTATACAAC 124765 | | ||||| |||| || || ||| |||| | || ||||||||| ||||| || ||| Sbjct 1190 GCTACACCAAGTAAGAAATGTAGAACAATT---AGCTCATAAGGACCGCCATTGTATAAC 1246 Query 124766 CATTCATCAACAGTTGCTGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGAT 124825 ||||||||||| | ||| |||||||| |||||||| || || | || ||||| || Sbjct 1247 CATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGAA 1306 Query 124826 GATGGAACAACTGCACCAGAGATGATGTTGTTACCATATAAGAAAGAACCCGCTACTGGT 124885 | |||| || |||||||| || || ||||| ||||| | | ||| || | || ||| Sbjct 1307 GTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGT 1366 Query 124886 TCTCTGATTCCGTCGATATCGACAGGAGGTGCTGCAATAAATGCAACGATGAA-ACATGC 124944 || | || || || ||||| || |||||||| ||||| || || | || || ||| | Sbjct 1367 TCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCGATAATAAATACA-GA 1425 Query 124945 TGCTGCTGTGAGTAAGCATGGAATCATTAGAACACCAAACCAACCAACATAAATTCTGTT 125004 | ||| || | ||| || ||||| | |||||||||||| |||| |||| | ||| Sbjct 1426 AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1485 Query 125005 GTTTGTTGATGTTACCCACTCACAGAA 125031 | || |||| ||| | |||||| Sbjct 1486 TTCAGTGCTGGTTATCCAGTTACAGAA 1512 Score = 379 bits (420), Expect = 2e-100 Identities = 709/1039 (68%), Gaps = 23/1039 (2%) Strand=Plus/Minus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || ||||||| || || ||||| || || Sbjct 38264 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTG 38205 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || || | |||||| || | || ||||| || | ||||| || || || ||||| Sbjct 38204 ATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTAGTGTAGAA 38145 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || || || ||||| ||||| | ||||| ||||| || ||||| || || | Sbjct 38144 AGTCTCAAATTCAGGATCTTCCGCTGCACGGATCTCCTGAGAAACGAAGTCATAGGCACG 38085 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 || || || || ||||| || | || | || |||| | ||| | || || || Sbjct 38084 TAGATTCAGAGCCAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTAC 38025 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || ||||||| ||| ||||| | | ||| || ||||| || | ||||| || || || Sbjct 38024 AAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGA 37965 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || |||| ||| |||||||||||| | || || || | || || Sbjct 37964 CCAAAAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGC 37905 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| | || ||| || ||||| | || || Sbjct 37904 ACGGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 37866 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || ||||| | || |||||| || || ||||| Sbjct 37865 ATTTTCTACAGTAGCACCATGAATAGCGCATAGCAGAGCAGCACCTAATACGCCGGCAAC 37806 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||| || ||| || || ||||| | || | ||| | Sbjct 37805 CCCCATCATATGAAATGGGTTCAGCGTCCAGTTATGAAACCCTTGGAAAAAGAGGATGAA 37746 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || ||||| ||||| || || || || ||||||| |||||||||||| Sbjct 37745 TCGAAATATAGCTGCTACACCAAAACTAGGCGCAAAAAACCAACCAGACTGACCTAGTGG 37686 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| ||||| || | | || || || || | |||||||||||| ||| || || Sbjct 37685 ATAAATCAGGAATACAGAAACAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATA 37626 Query 123526 AGGTC-TAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTC 123584 ||||| ||| | || || || | |||||||| | | ||| |||||||| |||| Sbjct 37625 AGGTCGCAATTGC-ACGGATCGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAGTC 37567 Query 123585 CAAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGA 123644 | || | || || | || ||||| |||| | ||| || | ||| |||||||| | Sbjct 37566 CGAAAGCACCGTGGAGAGCAACAAAAGTCCACAAACCGCCTAATTGACACCAACGAGTAA 37507 Query 123645 ATGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAG 123704 | ||||||||||| || ||||| || || | | | ||| | | | | ||| Sbjct 37506 AATCCCCTTGTGCTTCGGGACCCCATAGTAATAACAAAGAATGCGCTAAACTATTAGCAG 37447 Query 123705 GTGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCAT 123764 | || || ||||| || ||||||||||| || || | ||| ||| || | |||| Sbjct 37446 GAGTAGAAACTGCAGCGGTTAAGAAGTTGCAGCCTTCCAAATAGGAACTAGCCAATCCAT 37387 Query 123765 GTGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACG 123824 | ||||||||||| || || ||||| || ||| ||||||||| || | | | ||| | Sbjct 37386 GGGTATACCATGAGGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAGGCGAAATAGG 37327 Query 123825 CACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACC 123884 | ||||| | || || ||||| ||||| |||| || || ||||| || ||| ||||| Sbjct 37326 CGCAAGGAAAGAGCAATAGACCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACC 37267 Query 123885 AGTCGTCAAGAACATCAAA 123903 |||| || | || |||||| Sbjct 37266 AGTCATCCATAATATCAAA 37248 >seq353 Length=5262178 Score = 109 bits (120), Expect = 6e-19 Identities = 149/204 (73%), Gaps = 3/204 (1%) Strand=Plus/Minus Query 139823 AGTCTTCTTATCTC-TTGTAGAATTATATGCTA-ACAGC-ATTGCCTCTGCTGCTGCAGT 139879 |||||| || | || || |||||| ||| | | ||| |||||||| || || || || Sbjct 4174328 AGTCTTTTTCTTTCCTTTTAGAATATTATTACACATAGCCATTGCCTCAGCAGCAGCTGT 4174269 Query 139880 TGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCCTGTAAGTTCTGTGATGAGCGT 139939 | ||||||| | | || || |||| || || ||||| ||||| || || || | || Sbjct 4174268 TCCTTCATCAAGCAATGAAGCATTTGACATAGGCAATCCAGTAAGATCAGTAATCATAGT 4174209 Query 139940 TTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATATCTCAGCTTGATAGGGAGTGTA 139999 |||||||| | |||| ||||||||| || ||||| |||||||||||||| || || || Sbjct 4174208 CTGGTAATTAAGCAAAGATTCCAATCTCCCTTGAGAAATCTCAGCTTGATAAGGCGTATA 4174149 Query 140000 AGATGTGTACCAACTAGGATTCTC 140023 ||| |||||| ||||| || Sbjct 4174148 CTGTGTATACCAAGCTGGATTTTC 4174125 Score = 93.3 bits (102), Expect = 5e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 || ||||||||||| | |||||||| ||||||||||| ||||| || ||||| ||||| Sbjct 4177494 ACTCCAATAGGACCCATCCCAGGACCACCACCTCCATGGGGAATGCAAAATGTTTTATGG 4177435 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTG 138298 | ||| ||||| || ||||| || ||| | || ||| ||| ||||| ||||| Sbjct 4177434 AGATTGAGATGGCAAACATCAGCTCCAATGAAACCTGGACTTGTCAGACCCACCTG 4177379 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 138294 ACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATC 138353 ||||||||||| | || || ||||| | ||||| ||||| ||||||||||||| ||| Sbjct 4177099 ACCTGTGCATTCATGTTAGCTCCATCCATGTATACTTGACCTCCATTGTCATGAATTATC 4177040 Query 138354 TTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAA 138408 |||||||||| || | |||| | || |||||||| || |||||||||| Sbjct 4177039 TTACATATCTCATCAATACCTTCTTCATAGACTCCATGAGTGGAAGGATATGTAA 4176985 >seq135 Length=947859 Score = 93.3 bits (102), Expect = 5e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 124483 CATGTGGAAAGGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAA 124542 ||||| || || ||||| || ||||| ||||| |||||||| || | |||||||||||| Sbjct 378216 CATGTAAAATGGGTGCATAAGGATGTTCTGCTCAGCTTGGAATACAATCATAAAGTTGAA 378275 Query 124543 AGTACCTGAGATACCAAGTGGCATACCATCAGAGAA 124578 ||||| ||||| || | |||||||||||||| || Sbjct 378276 AGTACTGGAGATTCCTATAGGCATACCATCAGAAAA 378311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578954801420480