Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq700 131 2e-25 seq234 86.0 7e-12 seq676 84.2 3e-11 >seq700 Length=103685 Score = 131 bits (144), Expect = 2e-25 Identities = 299/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | || || ||||||||| | || ||||||| || ||| || || || Sbjct 7266 GAGGTAGTTGAGTTTCTCAAGAAGCCAGAGAGATTCACTGCCGTTGGGGCTCGCATTCCA 7325 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | ||| ||||| || || |||||||| || ||| ||||| Sbjct 7326 AAAGGTGTTCTTCTTGTTGGTCCTCCAGGAACTGGGAAGACCCTTCTAGCCAAGGCCATT 7385 Query 175351 GCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTT 175410 || |||||| | ||| ||||| || || | | | ||||| ||||||||| Sbjct 7386 GCTGGTGAAGCTGGTGTTCCATTTTTCTCCATATCAGGTTCTGAGTTTGTTGAGATGTTT 7445 Query 175411 GTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCA 175470 |||||||| |||||| || ||||| ||||| || | | || |||||| || Sbjct 7446 GTTGGTGTTGGTGCCTCTAGAGTTCGTGATCTGTTCAAGAAGGCGAAAGAAAATGCTCCC 7505 Query 175471 TGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGT 175527 || ||||| || | ||||| |||||||| || || | |||| | || |||| |||| Sbjct 7506 TGCATTGTATTTGTAGATGAAATTGATGCTGTTGGAAGGCAAAGAGGCACTGGCATTGGT 7565 Query 175528 ATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGC 175587 || |||||| || |||||||| || |||| || || | || || |||||||| Sbjct 7566 ---GGAGGAAATGATGAAAGAGAACAGACCCTTAACCAGCTTTTGACAGAAATGGATGGT 7622 Query 175588 TTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 ||||| | | ||||| ||| | || ||||| || || ||| | | || || || ||| Sbjct 7623 TTTGAGGGTAACACTGGTATTATCGTCATTGCAGCAACCAATAGGGCAGACATTCTGGAT 7682 Query 175648 GACGCCCTCCTTCGCCCGGGTCGTTTTGA 175676 ||||| | | || || || ||||| Sbjct 7683 TCTGCCCTGTTGAGGCCTGGACGATTTGA 7711 >seq234 Length=1393318 Score = 86.0 bits (94), Expect = 7e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||| ||||||| || ||||| || ||| || | ||| | ||||| | ||| Sbjct 704247 TTTGTGGAGTTGTTTGTGGGAGTGGGAGCATCAAGAGTCAGAGATTTGTTTGAGAAAGCC 704188 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 | ||| || || ||||| || ||||||||||||||||| || || | || | Sbjct 704187 AAAGCAAAGGCTCCTTGCATTGTATTTATTGATGAGATTGATGCCGTAGGAAGACAGAGA 704128 Query 175516 AGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 | |||||| | | |||||| |||||||| || || |||||||| | | || Sbjct 704127 GGAGCTGGTCTTGGAGGTGGAAATGATGAGAGAGAGCAGACTATTAATCAGTTGTTGACT 704068 Query 175576 GAGATGGATGGCTTT 175590 || |||||||| ||| Sbjct 704067 GAAATGGATGGATTT 704053 >seq676 Length=939917 Score = 84.2 bits (92), Expect = 3e-11 Identities = 174/258 (67%), Gaps = 12/258 (5%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||| | ||||||||||||||||| || || ||| || | ||| | || | | || Sbjct 114180 TTTATTGAGATGTTTGTTGGTGTAGGAGCTTCAAGAGTGAGGGATTTGTTCAACAAGGCA 114121 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG- 175514 | ||| |||||| | || || ||||||||||| ||||| || || | |||| | Sbjct 114120 AAGGCAAACTCACCATGCTTAGTATTTATTGATGAGATAGATGCTGTTGGGAGGCAAAGA 114061 Query 175515 ----CAG-CGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 ||| | ||||||| | ||| || ||||||||||||||| | || || | Sbjct 114060 GGGACAGGCATTGGTGGT------GGAAACGATGAGAGAGAACAAACATTAAACCAGTTG 114007 Query 175570 CTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAAT 175629 || || || |||||||| ||| | | | ||| || | |||||||| || || ||| Sbjct 114006 CTTACTGAAATGGATGGTTTTAGTGGTAACAGTGGAGTTATTGTTATTGCTGCTACAAAT 113947 Query 175630 CGCGTGGATATCCTTGAT 175647 ||| || || |||||| Sbjct 113946 CGCCCTGAAATTCTTGAT 113929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596524678309120