Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq6024 625 3e-174 seq456 143 3e-29 seq214 91.5 2e-13 >seq6024 Length=163856 Score = 625 bits (692), Expect = 3e-174 Identities = 733/988 (74%), Gaps = 2/988 (0%) Strand=Plus/Minus Query 165769 TTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTG 165828 ||||| | ||| | |||||||| | |||||||| || | || ||||||||| || Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 165829 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 165887 ||||| || ||| | ||| | |||||| |||| || || |||| ||||| ||||| || Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACC 1394 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || || || || || || |||||||| || |||| ||||| | ||||| ||||| Sbjct 1393 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 1334 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 || || |||||||| || |||| |||| || || ||| | || || || || || Sbjct 1333 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 1274 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 |||||||| ||||| |||| |||||| | || || || ||||||| | || |||| Sbjct 1273 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1214 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 | || ||| | |||| | | ||||||||||||||||||||||| || ||| Sbjct 1213 TCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1154 Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187 ||| |||||||| || ||||| |||||| || ||||| || || || ||||| | ||| Sbjct 1153 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1094 Query 166188 AGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 166247 || ||| | | ||||| | |||||||| || || ||||||| ||||| || ||||| Sbjct 1093 TGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 1034 Query 166248 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 166307 ||| || || ||||||| ||| | || ||||| ||||||||||| || || ||||| || Sbjct 1033 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 974 Query 166308 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 166367 || || ||| | ||||| ||||| ||||| || || | || ||||||||||| || Sbjct 973 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 914 Query 166368 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 166427 ||||| || ||| | | | || || || || |||| ||||| || | || Sbjct 913 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 854 Query 166428 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 166487 ||||| ||||| ||||| |||||||| || || |||||||||||||||||||| || || Sbjct 853 TTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGG 794 Query 166488 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 166547 || |||||||||||||| ||| |||||||| || || || || || |||||| | || Sbjct 793 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 734 Query 166548 TGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAA 166607 ||| |||||||| || || || |||||||| || | || | ||| ||||| ||||| Sbjct 733 TGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 674 Query 166608 CCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACAC 166667 ||| || |||||||| |||||||| ||| | ||||| |||| |||||||| | || || Sbjct 673 CCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 614 Query 166668 CTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAACGC 166727 |||||| ||| || ||||||| ||| || |||||||||||||||||||| ||||| || Sbjct 613 CTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 554 Query 166728 ACACAACTTCCCCCTCGACCTCGCTGCT 166755 || |||||||| || ||||| |||||| Sbjct 553 TCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 538 bits (596), Expect = 4e-148 Identities = 738/1025 (72%), Gaps = 16/1025 (2%) Strand=Plus/Plus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | ||||| ||||| |||||||| || ||||| || Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| || ||| | || | || |||||| | || || || || || Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGG-TGCGAACTTT 167190 || || |||||||| |||||| | || || | ||| | || || ||| ||||| Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCC--TATTTGGAAGGCTGC-AACTTC 37424 Query 167191 CTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGG 167250 | || || |||||| |||||| || || | | | |||||||| | | |||||| Sbjct 37425 TTAACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGG 37484 Query 167251 GGTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTT 167310 ||||| ||| | ||||||||||| | ||| ||| | || || | ||| ||||| Sbjct 37485 GGTCCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTT 37544 Query 167311 GTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCT 167370 || || |||||||| || || | || || ||||| ||| | || || |||||||||||| Sbjct 37545 GTTGCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCT 37604 Query 167371 CG---CCTG--ATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTG 167425 || | || |||| || || || ||||| || || ||||||||||| ||||||| Sbjct 37605 CGATCCGTGCAATTG-----CGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTG 37659 Query 167426 TCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGT 167485 | || ||| || ||||| | ||||| || ||||| | ||||| ||||| || Sbjct 37660 TTTTTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTA 37719 Query 167486 CCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGA 167545 || || || || || || || |||||| ||||||| ||||||| || || ||||||| Sbjct 37720 GTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGA 37779 Query 167546 CACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTG 167605 | ||||| ||||||||||||||||| || || || | | |||| ||| |||| | | Sbjct 37780 CGCTGAACCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCG 37839 Query 167606 CAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTT 167665 | || ||||||| ||| ||||| |||||||| | |||||||||||| ||||| || | Sbjct 37840 CTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACAT 37899 Query 167666 TTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGAT 167725 | || || | | ||||| | ||||| ||||||||||||||||| || ||||| | Sbjct 37900 TCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCT 37959 Query 167726 TCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGT 167785 | ||||| || ||||| || ||||||| ||| ||||| ||| | ||||||||||||| Sbjct 37960 TTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGT 38019 Query 167786 TATTCGTTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTA 167845 |||| || || || | || | |||| | |||| | | ||||||||||| | Sbjct 38020 TATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGA 38079 Query 167846 ATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTG 167905 |||| ||||| || || ||||||||||| |||||| | || ||||| ||||| || |||| Sbjct 38080 ATCTACGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTG 38139 Query 167906 AAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTA 167965 | |||||||| |||||||| || || | || |||||| |||| || ||| | || || Sbjct 38140 AGACTTTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 38199 Query 167966 TCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCAC 168025 ||||| |||||||| ||| || | ||||| ||||| ||||| ||||| || ||||| | Sbjct 38200 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTC 38259 Query 168026 TATAA 168030 | ||| Sbjct 38260 TTTAA 38264 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| || |||||||| Sbjct 116337 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTA 116278 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 116277 GGTTCGAATCCTACTTGGGGAG 116256 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| || |||||||| Sbjct 139251 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTA 139310 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 139311 GGTTCGAATCCTACTTGGGGAG 139332 >seq456 Length=400266 Score = 143 bits (158), Expect = 3e-29 Identities = 308/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 167485 TCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGG 167544 ||||| | || || | || || |||||| || |||| |||||| || | |||| | Sbjct 321070 TCCTTTTGTGTAGCAACTATATTTCGATTCATCTTCTTTTTCCAAGAGTTTTATAACTAG 321011 Query 167545 ACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTC- 167603 | |||| ||||||||||||| ||| || || || || || | | ||| |||| | Sbjct 321010 ATGTTGAACCCATTTCATATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTGC 320951 Query 167604 --TGCA--ATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAA 167659 |||| || ||| |||||| ||||| || ||||| | |||||||||||| | || Sbjct 320950 TATGCACTATTCATAGTGTTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGTAA 320891 Query 167660 ACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAA 167719 ||||||| | | || | | ||||| ||||| ||||||||| | || || || | Sbjct 320890 ACACTTTGCATACCTTTAAACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCCA 320831 Query 167720 ACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCT 167779 ||| || |||||||| ||||| || |||||||| || ||| | || | |||||| Sbjct 320830 ACCACTTTTGGTCTCAAATCTTTGG-ATTGCTTTTTCTAATAAATGTTGATTATATTTCT 320772 Query 167780 TTATGTTATTCGTTCCCGTTATGGGACTTTGGACATCA--TCGATTGGCATCATTGGTCT 167837 ||||||||| | || || || | ||| | || | | || | || | | | | Sbjct 320771 TTATGTTATCTATACCAGTAATCG--ATTTATAGATGAGTGCTCTTAGAATAGTCGATTT 320714 Query 167838 GGCTCTTAATCTTCGTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCC 167897 | || | ||||| |||| || || || | ||||||||| ||| | | ||| |||| Sbjct 320713 GACTTTCAATCTATGTGCCTATGACTTTGCTTCTCAAGAAATC-TATAAGAGGAAAATCC 320655 Query 167898 AGAGTTTGAAACTTTCTATACTAAAAACATCCT 167930 || || | |||||||| |||||||| || || Sbjct 320654 TGA-ATTCAGACTTTCTACACTAAAAATATTCT 320623 >seq214 Length=442246 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/200 (72%), Gaps = 11/200 (6%) Strand=Plus/Plus Query 167440 TTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCC-GTCCTTCGGAGTCGC 167498 ||||| | ||||| || ||||| | ||||| ||||| || || || || || || Sbjct 75047 TTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCAGT--TTTGGTGTAGC 75104 Query 167499 CGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATT 167558 || || || |||||| ||||||| ||||||| || | ||||| ||||| ||||| Sbjct 75105 AGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTG----CTGAACCCATT 75160 Query 167559 TCATATGATGGGTGTAG-CAG-GTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGT 167616 |||||| ||||| || | ||| |||| | |||| ||| || | || || |||||| Sbjct 75161 TCATATCATGGGGGTTGCCAGCGTAT--TAGGTGCTGCTCTGTAATGCGCTATTCATGGT 75218 Query 167617 GTTACAGTAGAGAATACTTT 167636 | ||| ||||| |||||||| Sbjct 75219 GGTACTGTAGAAAATACTTT 75238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561205738025600