Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq6024 596 4e-166 seq823 131 5e-26 >seq6024 Length=163856 Score = 596 bits (660), Expect = 4e-166 Identities = 735/996 (74%), Gaps = 8/996 (1%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || ||| | ||||||||||| |||| |||||| Sbjct 1521 TGGGGTCGTTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTT 1462 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| ||||||| || | | | | || || | ||| |||||| |||||||||| Sbjct 1461 GGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCAT 1403 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||||||||| |||||||| |||||||||||||| ||||| ||||| || || Sbjct 1402 TGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTA 1343 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| || || ||||||||| | | |||| | || || || | ||||| Sbjct 1342 TGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTT 1283 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| || |||| |||||| | ||||||||||| |||||| | Sbjct 1282 TTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGA 1223 Query 42579 GCTCGTCGTGTTCCAC-TTCCTTA-TCGGTATCTTCTCTTACTTGGGACGCGAATGGGAA 42636 ||| | ||||| || || |||| | ||| | | |||| |||| || || |||||| Sbjct 1222 GCTAAT--TGTTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 1165 Query 42637 CTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCT 42696 ||| | ||| || || ||| | || ||||| |||||| || || || ||||| || Sbjct 1164 CTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCA 1105 Query 42697 GCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATG 42756 || || ||||| || ||| | |||||||| |||| ||||| ||||| ||||| ||| Sbjct 1104 GCTGCTACTGCTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATG 1045 Query 42757 CCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATT 42816 ||||| || || || ||||| |||||||| ||| | || ||||||||||| || ||||| Sbjct 1044 CCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATC 985 Query 42817 CTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCA 42876 |||||||| || || || ||| | || || || || ||||| || || || | ||| Sbjct 984 CTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGT 925 Query 42877 GCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGC 42936 |||||||||||| | || |||||| | | | | ||||| || ||||| ||| Sbjct 924 GCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCT 865 Query 42937 CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 ||| | || |||| |||||||||||||| || |||||||| || || || || ||| Sbjct 864 GCTAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCAT 805 Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCA 43055 ||||| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| || Sbjct 804 GGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACA 746 Query 43056 CTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTAC 43115 ||||| | || |||||||| || || || |||||||||||| || | || | || || Sbjct 745 TTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCAC 686 Query 43116 TATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCA 43175 |||||| || ||| | |||||||| || || |||||||| | ||||||| ||| || Sbjct 685 TATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCG 626 Query 43176 TGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCA 43235 ||| || ||| |||||||||||| | || ||||| |||||||| | || || ||||| Sbjct 625 TGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCA 566 Query 43236 CGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 || || ||||| ||||||||||| || || || || Sbjct 565 TGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 530 >seq823 Length=108574 Score = 131 bits (144), Expect = 5e-26 Identities = 94/107 (88%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 42378 CTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAAC 42436 |||| |||||| |||||||||||||||| ||||||||||| |||||||| |||||||||| Sbjct 46639 CTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAAC 46698 Query 42437 CTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCC 42483 |||| ||||| ||||| || ||||| ||||| || || ||||||||| Sbjct 46699 CTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCC 46745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143522532381152