Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq6024 571 7e-158 seq823 116 4e-21 seq135 84.2 3e-11 >seq6024 Length=163856 Score = 571 bits (632), Expect = 7e-158 Identities = 708/968 (73%), Gaps = 6/968 (1%) Strand=Plus/Minus Query 154991 CTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTG 155050 |||| ||||| | || | || ||||| |||||| | ||||||||| | | | | Sbjct 1490 CTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCG 1431 Query 155051 CTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTC 155110 | || | || ||| |||| ||||||||||||||||| ||||| ||||||||||||| Sbjct 1430 CAACTTCTGTATTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTC 1371 Query 155111 GTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCC 155170 ||||||| || |||| ||| || | ||||| ||||| || || |||||||| || | | Sbjct 1370 GTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTC 1311 Query 155171 CTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATG 155230 ||| ||| || || ||| | || || || || || |||||||| ||| | |||||| Sbjct 1310 CTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCCGTTGATG 1251 Query 155231 AGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCA 155290 | ||||| |||||||| ||||||| | || | || | || ||| | | || | Sbjct 1250 AATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACATTTCTTACTTGGTGTAG 1191 Query 155291 CAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCT 155350 | ||| |||||| ||||||||||| || |||||| || ||||| |||||||| Sbjct 1190 CTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTG 1131 Query 155351 GTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCG 155410 ||||||||| || || || || | ||||| ||||| ||| | | ||||| | | Sbjct 1130 CTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTATCCAATTG 1071 Query 155411 GTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGT 155470 ||||||| || ||||||| |||||||| || |||||||||||||| |||| |||| Sbjct 1070 GTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGA 1011 Query 155471 TCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG 155530 | || ||||| || || ||||| |||||||||||||| || |||||| | || ||||| | Sbjct 1010 TTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTG 951 Query 155531 GTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAA 155590 |||| ||||| || || || ||| ||||||||| ||||| ||||| || ||| | | Sbjct 950 GTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGA 891 Query 155591 TCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 155650 || | ||||| || || | || ||| || | ||||||| ||||| ||||| |||| Sbjct 890 TCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGTCAAGAGGAAG 831 Query 155651 AAACTTATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCAT 155710 |||||||||| || || || |||||||| || || || || | |||||||| ||||| Sbjct 830 AAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTA 771 Query 155711 CCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCT 155770 |||||||| || | | | || |||||| | ||||| |||||||| || | || | Sbjct 770 GTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTT 711 Query 155771 GGGCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACC 155830 || |||||| | ||| | || ||||| |||||||| || |||||||| ||||||| Sbjct 710 GGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACC 651 Query 155831 AGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACC 155887 | || ||||| || |||| ||| || || ||| ||||| || ||| |||||| Sbjct 650 AATCCGTAGTTGA---TAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACC 594 Query 155888 GCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACC 155947 | ||| |||||||||||||| ||||| || ||||| ||||| ||||||||||| |||| Sbjct 593 GTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACC 534 Query 155948 TTGCTGCT 155955 | |||||| Sbjct 533 TAGCTGCT 526 >seq823 Length=108574 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| |||| ||||||||||||||||| ||||| |||||||||||||||||||| || Sbjct 46644 TTTATTATCGCTTTCATTGCTGCACCTCCGGTAGATATTGATGGTATTCGTGAACCTGTT 46703 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 |||| ||| || | ||||| ||||| || || |||||||| || | |||| ||| Sbjct 46704 TCTGGGTCTCTACTTTATGGAAACAATATTATTTCTGGTGCCATTATTCCTACTTCTGCG 46763 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTG 155210 || || ||| | || || || || || || Sbjct 46764 GCTATAGGTTTGCATTTTTACCCAATATG 46792 >seq135 Length=947859 Score = 84.2 bits (92), Expect = 3e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || ||||||| |||||| | || ||||| ||||||| |||| |||| | || |||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATG 155517 || || || || |||||||||||||| || ||||| Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATTTTACATG 378216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584791161909440