Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq6024 500 2e-137 seq823 89.7 1e-13 seq135 89.7 1e-13 >seq6024 Length=163856 Score = 500 bits (554), Expect = 2e-137 Identities = 711/992 (72%), Gaps = 10/992 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 526 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 585 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | ||||| || ||||||||| ||| ||| || ||| | | || ||||| Sbjct 586 GTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 645 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 || ||||| || || |||||||| ||||| ||||||||||| ||||| | | || Sbjct 646 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 705 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTT 40768 | ||| || || | || || ||||| | | ||||| |||| | ||| |||||| Sbjct 706 GAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 765 Query 40769 GAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATA 40828 ||| ||||||||| || || | || ||||| ||||| || || |||||||| ||||| Sbjct 766 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 825 Query 40829 AGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTC 40888 ||| || | || ||||| || | || || | || |||||| |||| ||||| || Sbjct 826 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 885 Query 40889 CCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACC 40945 || || | | |||| || ||||| || ||||||||| || | | ||| || Sbjct 886 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 942 Query 40946 AAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTG 41005 || || || || ||||| | ||| || ||||||||||| || |||||||| || || || Sbjct 943 GAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1002 Query 41006 GAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGA 41065 ||| |||| ||| |||||||| || ||| |||||||| ||||||||||||||| || Sbjct 1003 GAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCT 1062 Query 41066 ACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTA 41125 || ||||| | |||||| | ||||| ||||| ||| |||| | ||||||| || Sbjct 1063 TCCTTGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1122 Query 41126 TGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGC 41185 ||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 1123 TGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1182 Query 41186 GTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTA 41245 ||| ||||| || | ||| || || | ||||| || | ||| || ||||| ||||| Sbjct 1183 GTAACAAGCTACACCAAGTAAGAAATGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 1242 Query 41246 TAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGT 41304 || ||| || || | | |||| |||||||| |||||||| ||||| | || || || Sbjct 1243 TAACCATTCATCAACGGATGCC-GCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCG 1301 Query 41305 TAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAA 41364 ||| | |||| | || ||||| ||||||||||| || || | || || || |||| Sbjct 1302 CAGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGACCCAGAAA 1361 Query 41365 CGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-A 41423 | || ||||| || ||||| |||||||| || ||||| || || || ||||| || || | Sbjct 1362 CAGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCGATAATAAATA 1421 Query 41424 CATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGG 41483 || | || || || | ||| | || ||||| | ||||||||||| || | ||| || Sbjct 1422 CA-GAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGA 1480 Query 41484 CGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || ||||| || | ||||||||| || Sbjct 1481 CGGTTTTCAGTGCTGGTTATCCAGTTACAGAA 1512 >seq823 Length=108574 Score = 89.7 bits (98), Expect = 1e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 41274 CAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATA 41333 || |||||||| ||||| | || || || ||| | |||| | || ||||| ||| Sbjct 46792 CATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATA 46733 Query 41334 ATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACA 41393 |||||||| || || | || || || ||||| || ||||| || ||||| |||||||| Sbjct 46732 ATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCTACC 46673 Query 41394 GGCGGTGCTGCGATAAAGGCGATTATGAA 41422 || ||||| || || || ||||| || || Sbjct 46672 GGAGGTGCAGCAATGAAAGCGATAATAAA 46644 >seq135 Length=947859 Score = 89.7 bits (98), Expect = 1e-13 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 40961 GCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAA 41020 ||| | ||| | ||||||||||| || ||||| || || |||||||| |||| ||| || Sbjct 378210 GCCTAACATGTAAAATGGGTGCATAAGGATGTTCTGCTCAGCTTGGAATACAATCATAAA 378269 Query 41021 GTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 |||||| || | |||||||| ||||||||||||||| || Sbjct 378270 GTTGAAAGTACTGGAGATTCCTATAGGCATACCATCAGAAAA 378311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143692120248816