Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq6024 569 2e-157 seq823 93.3 5e-14 >seq6024 Length=163856 Score = 569 bits (630), Expect = 2e-157 Identities = 719/987 (73%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 526 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 585 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| || || ||||| ||| ||| || || |||| ||||| Sbjct 586 GTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTATCAAC 642 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 |||||||||||||| |||||||| || |||||||| |||||||| | ||| | || Sbjct 643 TACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGC 702 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||||||||| || | || ||||| | ||||| | |||||| || | | | || || Sbjct 703 AGTGAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATT 762 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| ||||| ||||||||||| || || || || |||||||| || || || || Sbjct 763 GTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATT 822 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| ||||| ||||||| | || || || | || || || Sbjct 823 ATAAGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGT 882 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| || Sbjct 883 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 942 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || |||||||||||||||||||||||||| || || Sbjct 943 GAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTG 1002 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | ||| |||| ||||||||||| || || |||||||| | ||||| || Sbjct 1003 GAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCT 1062 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | ||||||| |||||| ||||| || || | || ||||| || || Sbjct 1063 TCCTTGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 1122 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACA 68014 ||| ||| |||||||| |||||||| |||||| || ||||||||||| |||||| Sbjct 1123 TGCAACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1182 Query 68015 GTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATA 68074 ||| | | || | | ||| || | || | || | |||| || ||||| || Sbjct 1183 GTAACAAGCTACACCAAGTAAGAAATGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 1242 Query 68075 CAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTT 68134 ||||| ||||| | | ||| |||||||| || || || || || | ||| || || Sbjct 1243 TAACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGC 1302 Query 68135 TGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAAC 68194 ||| |||||| || ||||||||||| || ||||| || || | || || || | ||| Sbjct 1303 AGAAGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGACCCAGAAAC 1362 Query 68195 AGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAAGCA 68254 |||||| | |||||||| ||||| || |||||||| |||||||| || || || || Sbjct 1363 AGGTTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCGATAATAAATAC 1422 Query 68255 AGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCG 68314 || | ||| | | || ||| |||||||| ||||| ||||| |||| || | || Sbjct 1423 AGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACG 1482 Query 68315 ATTGTCAACTGAGGTGACCCAGTTACA 68341 || ||| ||| | ||||||||| Sbjct 1483 GTTTTCAGTGCTGGTTATCCAGTTACA 1509 >seq823 Length=108574 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 68103 CAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATG 68162 || || || || || || | ||| || || ||| |||||| || ||||||||||| Sbjct 46792 CATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATA 46733 Query 68163 ATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACT 68222 || ||||| || || | || || || | ||||||||| | |||||||| ||||| || Sbjct 46732 ATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCTACC 46673 Query 68223 GGAGGTGCTGCAATGAATGCAATGATGAA 68251 |||||||| |||||||| || || || || Sbjct 46672 GGAGGTGCAGCAATGAAAGCGATAATAAA 46644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566904508875840