Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq6024 679 0.0 seq456 185 1e-41 seq823 114 1e-20 seq214 111 2e-19 seq102 86.0 7e-12 seq54 86.0 7e-12 >seq6024 Length=163856 Score = 679 bits (752), Expect = 0.0 Identities = 733/968 (76%), Gaps = 2/968 (0%) Strand=Plus/Plus Query 67839 AGCAGCAAGGTCGAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATACCCAA 67898 |||||| ||||| ||||||||||| || || ||||| |||||||||||||||||||| | Sbjct 526 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 585 Query 67899 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTAGGCAGAACCTTACCAGAACTATCAAGGAT 67958 ||| ||||| | || || ||||||||| | || ||| |||||||| | Sbjct 586 GTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTAC 645 Query 67959 AGACTGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGT 68018 || |||||||| ||||||||||| |||||||| ||||| ||||||| ||| | ||||| Sbjct 646 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTAAAGCAGT 705 Query 68019 GAACCAGATACCAACGACAGGCCATGCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTT 68078 |||||| ||||| || |||||||| ||||| | |||||| || | ||||| || ||||| Sbjct 706 GAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTT 765 Query 68079 GAACGATGCATACTGGAAGATCAGACGACCGAAGTATCCATGTGCAGCAACAATGTTGTA 68138 ||| ||||| |||||||||| || || || || ||||| || || || || || || Sbjct 766 GAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATA 825 Query 68139 AGTCTCTTCTTCTTGACCGAACTTGTAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTC 68198 ||| ||||| ||||||||||| ||||||| | || || ||| |||| |||||||| Sbjct 826 AGTTTCTTCCTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTC 885 Query 68199 ACGAACCAGTGAAGAAGTAACCAGGGAACCATGCATTGCACTGAACAGAGATCCACCAAA 68258 | | || ||| || |||| |||||||||||| |||||||| || || || || || Sbjct 886 CCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAA 945 Query 68259 TACGCCAGCAACGCCGAGCATATGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAA 68318 ||| ||||| ||||| | ||| || || |||||||| |||||||||||||| || ||||| Sbjct 946 TACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAA 1005 Query 68319 CACCAGCATGTAGTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACC 68378 || | ||| |||||||||||||||| || || |||||||| | ||||| || || Sbjct 1006 TACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 1065 Query 68379 TTGACCGAAAGGATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGC 68438 |||||| | ||||||| || ||| || || | || ||||||||||| || || ||||| Sbjct 1066 TTGACCAATTGGATAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGC 1125 Query 68439 AACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTCCCATGTA 68498 |||| |||||||| |||||||| ||||| | ||||||||| ||||| |||||||| Sbjct 1126 AACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATGTA 1185 Query 68499 TGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCATTGTACAA 68558 | | ||||| | ||| || | | | || | ||||||| |||||||| || Sbjct 1186 ACAAGCTACACCAAGTAAGAAATGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAA 1245 Query 68559 CCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGA 68618 ||| ||||||| || ||| |||||||| || || ||||| || | ||| || || || Sbjct 1246 CCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAATGCAAACCTATAGCCGCAGA 1305 Query 68619 ACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGG 68678 | |||||| || ||||||||||| || ||||| ||||| || || || |||| |||||| Sbjct 1306 AGTAGGAATAATGGCACCAGAAATAATATTGTTTCCATAAAGTAGAGACCCAGAAACAGG 1365 Query 68679 TTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGA 68737 ||||||||||||||| || || || || || ||||| ||||| |||| || || ||||| Sbjct 1366 TTCACGAATACCATCAATATCTACCGGAGGTGCAGCAATGAAAGCGATAATAAATACAGA 1425 Query 68738 TGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGT 68797 ||||| | | | ||||||||||||| || || ||||| |||| |||||| |||| Sbjct 1426 -AGTTGCGGTCAATAAAGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGT 1484 Query 68798 TCTCTGTG 68805 | || ||| Sbjct 1485 TTTCAGTG 1492 Score = 567 bits (628), Expect = 8e-157 Identities = 737/1014 (73%), Gaps = 16/1014 (2%) Strand=Plus/Minus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || ||||||| || ||||||||| || | Sbjct 38265 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 38206 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 |||| || |||| ||| ||||||| |||||| || || ||||| || || ||||||| Sbjct 38205 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTAGTGTAGA 38146 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || || || ||||| ||||| | |||||| || || || |||||||| |||| Sbjct 38145 AAGTCTCAAATTCAGGATCTTCCGCTGCACGGATCTCCTGAGAAACGAAGTCATAGGCAC 38086 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 | || || ||||| ||||| | | || | | ||| |||| | ||| | || || | Sbjct 38085 GTAGATTCAGAGCCAGACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 38026 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| || | Sbjct 38025 CAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGG 37966 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || ||||||||||| ||||||||||| ||||||| | || || | Sbjct 37965 ACCAAAAGCGGTTAGCGGTAACCATTGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAG 37906 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||||||| | | |||||| ||||| ||| |||||| Sbjct 37905 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 37846 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | |||| ||| |||| | | || || || |||||||||||||| |||| Sbjct 37845 GAATAGCGCATAGCAGAGCAGCACCTAATACGCCGGCAACCCCCATCATATGAAATGGGT 37786 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 ||| ||||||||||| || ||||| | ||||| | ||||||||| || |||| || | Sbjct 37785 TCAGCGTCCAGTTATGAAACCCTTGGAAAAAGAGGATGAATCGAAATATAGCTGCTACAC 37726 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || |||||||||| || ||||| || || || || || || ||| || Sbjct 37725 CAAAACTAGGCGCAAAAAACCAACCAGACTGACCTAGTGGATAAATCAGGAATACAGAAA 37666 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGA----TACCGATG 67241 |||||||||| || ||||||||||| || || ||||| || || || | || ||| Sbjct 37665 CAAAAACAGCAATTGGACCAGAGAATGCGATTGCATTATAAGGTCGCAATTGCACGGAT- 37607 Query 67242 AGACGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGC 67301 || || |||||||| || || | ||| ||||| ||||| ||||||| |||||||| Sbjct 37606 ---CGAGCAAGTTCAAATTGACGTAACATAAAACCTATTAGTCCGAAAGCACCGTGGAGA 37550 Query 67302 GCCACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCA 67361 || |||||| |||| | || || | ||| ||| || |||||||| || | || Sbjct 37549 GCAACAAAAGTCCACAAACCGCCTAATTGACACCAACGAGTAAAATCCCCTTGTGCTTCG 37490 Query 67362 GGACCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCT 67421 |||||||| |||| | | |||||| | | | || |||||| || || || || || Sbjct 37489 GGACCCCATAGTAATAACAAAGAATGCGCTAAACTATTAGCAGGAGTAGAAACTGCAGCG 37430 Query 67422 GTGAGAAAATTAGCA-CCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCT 67477 || | | || | ||| || || | || ||||| || | ||| || || ||||| Sbjct 37429 GTTA-AGAAGTTGCAGCCTTCCAAATAGGAACTA---GCCAATCCATGGGTATACCATGA 37374 Query 67478 TGTGACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAG 67537 || ||||| || ||||| || | ||| || || | || | ||| || ||||| || Sbjct 37373 GGTTACAAAGGTTGTACCTGTGAACCAACCCCCTAAGGCGAAATAGGCGCAAGGAAAGAG 37314 Query 67538 AAGTAGTCCAGACCAACCCACAAAGACAAAGCGATCTCGTTTAAGCCAGTCATC 67591 | ||| || |||||||| ||||| || || || || | | ||||||||| Sbjct 37313 CAATAGACCGGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATC 37260 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 116248 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 116305 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 116306 TCTACCACTGAGCTACTGAGGA 116327 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 139340 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 139283 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 139282 TCTACCACTGAGCTACTGAGGA 139261 >seq456 Length=400266 Score = 185 bits (204), Expect = 1e-41 Identities = 308/437 (70%), Gaps = 10/437 (2%) Strand=Plus/Plus Query 66684 AATAGAATGTTCTTTGTGTAGAACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCT 66743 || ||||| || || |||||||| |||| ||| || || | ||| || | ||| ||| Sbjct 320620 AAGAGAATATTTTTAGTGTAGAAAGTCT-GAATTCAGGATTTTCCTCTTATA-GATTTCT 320677 Query 66744 TGGGATACAAAGTCATAAGCACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTT 66803 || || |||||||||| |||| || |||| || | | | | || | | | ||| Sbjct 320678 TGAGAAGCAAAGTCATAGGCACATAGATTGAAAGTCAAATCGACTATTCTAAGAGCACTC 320737 Query 66804 GTCCAAAGACCCATAACAGGAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTA 66863 || | | | | || || || | | | ||||||||||||| || || | ||||| | Sbjct 320738 ATCTATAAATCGATTACTGGTATAGATAACATAAAGAAATATAATCAACATTTATTAGAA 320797 Query 66864 AACGCAATACCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCT 66923 || ||||| |||||||| |||||||| ||| |||| ||||| || | ||| ||||||||| Sbjct 320798 AAAGCAAT-CCAAAGATTTGAGACCAAAAGTGGTTGGCAGTGACGACTGAATAAGTTTCT 320856 Query 66924 TCCTCTTGAGTAGAGTCGAATGCTTTG-AAAGTGTTTGCTTGTTCACCATCTTCATACAG 66982 || |||||| | || || | | || ||||||||| | |||||||||||| | | Sbjct 320857 TCAGATTGAGTTG-GTTTAAAGGTATGCAAAGTGTTTACACCATCACCATCTTCAGATAA 320915 Query 66983 AGTATTCTCTACTGTAACACCATGAAT--GGCA---GAAAGCAATGCACCACCCAGGATA 67037 ||| || ||||| |||||| |||||| ||| | |||| ||| | | || || Sbjct 320916 AGTCTTTTCTACAATAACACTATGAATAGTGCATAGCAGAGCAGTGCCCAATACAATATG 320975 Query 67038 CCTGCTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAG 67097 || || || ||| |||||||||| |||||||| || |||||| || |||| | ||| Sbjct 320976 CCGGCAACTCCCGTCATATGAAATGGGTTCAACATCTAGTTATAAAACTCTTGGAAAAAG 321035 Query 67098 AGAAGGAATCGAAAGAT 67114 | | ||||||||| || Sbjct 321036 AAGATGAATCGAAATAT 321052 >seq823 Length=108574 Score = 114 bits (126), Expect = 1e-20 Identities = 119/155 (77%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 68584 CAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATG 68643 || || || ||||| || | ||| || || ||| |||||| || ||||||||||| Sbjct 46792 CATATTGGGTAAAAATGCAAACCTATAGCCGCAGAAGTAGGAATAATGGCACCAGAAATA 46733 Query 68644 ATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACA 68703 || ||||| ||||| || || || |||| ||||||||||||||||||||| || || || Sbjct 46732 ATATTGTTTCCATAAAGTAGAGACCCAGAAACAGGTTCACGAATACCATCAATATCTACC 46673 Query 68704 GGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGA 68737 || || ||||| ||||| |||| || || ||||| Sbjct 46672 GGAGGTGCAGCAATGAAAGCGATAATAAATACAGA 46638 >seq214 Length=442246 Score = 111 bits (122), Expect = 2e-19 Identities = 146/197 (74%), Gaps = 9/197 (5%) Strand=Plus/Minus Query 66983 AGTATTCTCTACTGTAACACCATGAATGGCAGAAAGCAATGCACCACCCAGGATAC-CTG 67041 |||||| ||||| ||| |||||||||| || | || ||| |||| | |||| ||| Sbjct 75236 AGTATTTTCTACAGTACCACCATGAATAGCGCATTACAGAGCAGCACCTA--ATACGCTG 75179 Query 67042 -CTACACCCATCATATGAAACGGGTTCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGA 67100 | || ||||| |||||||| ||||||| ||||||| || ||||| | ||||| Sbjct 75178 GCAACCCCCATGATATGAAATGGGTTCAG----CAGTTATTAAACCCTTGGAAAAAGAGG 75123 Query 67101 AGGAATCGAAAGATTGCTGAGACCCCGAAAGATGGAGCGAAAAACCAACTCGATTGACCC 67160 | ||||||||| || |||| || || ||| ||| || |||||||||| || |||||| Sbjct 75122 ATGAATCGAAATATAGCTGCTACACCAAAAC-TGGCGCAAAAAACCAACCAGACTGACCC 75064 Query 67161 AGAGGGTAGATGAGAAA 67177 ||||| || || || || Sbjct 75063 AGAGGATAAATCAGGAA 75047 >seq102 Length=2022542 Score = 86.0 bits (94), Expect = 7e-12 Identities = 218/327 (67%), Gaps = 10/327 (3%) Strand=Plus/Minus Query 68331 GTTGAAAGTACCAGAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGG 68390 ||||||||||| ||| || || |||||||| | ||| | || |||||||| | || Sbjct 1592310 GTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAAAAAAGCTTCCTTGACCAATTGG 1592251 Query 68391 ATAGACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAAC-ACAGATCC 68449 ||||| || ||| || | | || || || ||| | || || | ||| ||| |||| Sbjct 1592250 ATAGATCAAGAAAACAGTAGTAGCAACTATAATAGGAGTTGAATACGTAACTACA-ATCC 1592192 Query 68450 AAGGACGCATACCAAGACG--ATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGAT 68507 |||| ||||||| ||| | | | || || ||| | | | |||||||| | | Sbjct 1592191 AAGGGCGCATACGCAGATGGAAAAACTAACTTTCCACTTAGGACCCATGTAACAAGCTAC 1592132 Query 68508 ACCAATCAGGAAGT---GAAAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTC 68564 ||||| | ||| | ||| ||| || | ||| |||| ||||||| || || || Sbjct 1592131 ACCAAGTAAGAAATATAGAACAATT---AGCTCATAAGAACCATCATTGTATAATCATTC 1592075 Query 68565 ATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGG 68624 ||||| || |||||||| || || ||||| || | | | || || || |||| Sbjct 1592074 ATCAATAAATGATGCTTCCCGTATTGGGTAAAAATGCAAATCTATAGCTGCAAAAGTAGG 1592015 Query 68625 AACAACAGCACCAGAAATGATGTTGTT 68651 || || |||||| |||| || || || Sbjct 1592014 AATAATGGCACCATAAATAATATTATT 1591988 >seq54 Length=3626826 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 67963 TGGTTGAAGTTGAAACCATTCAGGTTGAATGCCATGGTGCTAACACCAAGTGCAGTGAAC 68022 |||||||| |||||||| || |||||||| ||||| ||||||||||| | ||||||||| Sbjct 2788148 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATAGTGCTAACACCTAAAGCAGTGAAC 2788089 Query 68023 CAGATACCAACGACAGG 68039 || ||||| || || || Sbjct 2788088 CAAATACCTACAACGGG 2788072 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572011324303680