Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq167 138 2e-27 seq596 129 1e-24 seq707 114 2e-20 seq169 111 3e-19 seq41 102 1e-16 seq1027 86.0 1e-11 seq229 84.2 4e-11 >seq167 Length=3484751 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | ||| || |||| || | |||| |||||| ||||||| Sbjct 1288174 ATTTGCATACCACCACGGAGTCGGAGCACCAAGTGAAGCGTAGACTCTTTCTGAATATTA 1288115 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| | | || | | ||| |||| ||||| || |||||||| ||||| || ||| Sbjct 1288114 TAGTCAGCAAGTGTGCGACCATCCTCTAGCTGTTTCCCAGCAAAAATCAATCTTTGCTGA 1288055 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || || || || || ||||||||||||| || | ||| || ||||| ||| Sbjct 1288054 TCTGGTGGAATACCCTCCTTGTCTTGTATTTTGGCCTTGACATTATCGATGGTATCCGAA 1287995 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||||||| | ||| ||||| || || || || || || |||||||| ||||| Sbjct 1287994 CTCTCAACTTCCAAAGTGATAGTCTTGCCAGTGAGAGTCTTGACAAATATCTGCAT 1287939 Score = 104 bits (114), Expect = 4e-17 Identities = 164/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| | |||||| | | ||| || || || || | || | |||||| |||||||| Sbjct 1288856 TTAGAAACCACCACGGAGTCGGAGGACAAGGTGAAGAGTGGACTCTTTCTGGATATTATA 1288797 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 ||| | | |||| ||| || | |||||| || |||||||| |||| ||||| || Sbjct 1288796 GTCTGCAAGGGTTCGTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGTTGGTC 1288737 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 || || || || || || || || ||||| | || | ||| ||| || || || Sbjct 1288736 CGGGGGAATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATTGTGTCAGAGCT 1288677 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||||| || || || || ||||| ||||| || ||||| ||||| || |||||| Sbjct 1288676 CTCAACCTCGAGGGTAATGGTTTTCCCTGTCAGGGTTTTGACAAAAATCTGCATT 1288622 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| ||||| || || || |||||||||| || | || || |||||||| ||| Sbjct 2202494 ATACCTCCTCTTAAACGGAGGACCAGATGCAGAGTCGATTCCTTCTGGATATTATAATCG 2202553 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| || || | ||| ||||| || || || || | ||| || || || Sbjct 2202554 GCGAGTGTTCTTCCGTCTTCGAGTTGCTTTCCAGCGAAGATCAACCGCTGCTGGTCTGGT 2202613 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || || || |||| || | || ||||||||||| ||| Sbjct 2202614 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATAGTATCGGAGCTCTCC 2202673 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| ||||| || || || || || ||||| || || || ||||| Sbjct 2202674 ACCTCTAGCGTTATCGTCTTTCCGGTCAGGGTTTTCACGAAGATCTGCAT 2202723 Score = 100 bits (110), Expect = 5e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || || || | ||| | ||| || || || || |||| ||| || | | Sbjct 2202965 CGGAGGACGAGGTGGAGTGTTGACTCCTTCTGGATGTTGTAATCGGCTAATGTGCGGCCA 2203024 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || ||||| || || || ||||||||||| || || |||||||| ||| Sbjct 2203025 TCTTCAAGCTGCTTGCCGGCGAAGATCAACCTCTGTTGATCCGGTGGAATTCCTTCCTTA 2203084 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | || ||| |||||||| ||| || || ||||| ||| Sbjct 2203085 TCTTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCGACCTCGAGAGTAATA 2203144 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || ||||| || || || ||||| Sbjct 2203145 GTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCAT 2203179 >seq596 Length=4721113 Score = 129 bits (142), Expect = 1e-24 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||||||||| ||||| ||||| || | || | ||| || ||| || ||||| | Sbjct 1300448 ACCACCTCTCAAGCGAAGCACCAGGTGAAGAGTCGACTCCTTCTGAATGTTGTAGTCTGC 1300507 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || || || || | |||||||| || || |||| | ||| || || || || Sbjct 1300508 GAGGGTCCTGCCGTCTTCCAGCTGTTTTCCAGCGAAGATTAGACGCTGCTGGTCCGGTGG 1300567 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| || ||||| || |||| ||| | ||| || ||||||||||||||||| Sbjct 1300568 AATTCCTTCCTTGTCTTGGATCTTGGCTTTCACATTGTCGATGGTATCGGAAGACTCAAC 1300627 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || ||||| ||||| ||||| || || || ||||| || Sbjct 1300628 CTCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 1300678 >seq707 Length=3952773 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | ||||| ||||| || | || | || || ||||| ||||||| Sbjct 1981718 ACCACCACGAAGACGAAGCACCAGGTGGAGAGTGGATTCCTTCTGGATATTGTAGTCGGC 1981777 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | || | ||| |||| || |||||||| || || | || ||| || || ||||| Sbjct 1981778 AAGAGTGCGGCCATCCTCTAGCTGCTTTCCGGCGAAGATCAGTCGCTGCTGGTCTGGAGG 1981837 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || ||||| || || || || |||| || | ||| |||||||| ||||||||||| Sbjct 1981838 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTATCGATAGTATCAGAAGACTCAAC 1981897 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || || || ||||| ||||| || || || |||||||| Sbjct 1981898 CTCTAGGGTTATCGTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCATTTT 1981948 >seq169 Length=810068 Score = 111 bits (122), Expect = 3e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | | || || || ||||| | || | ||| || || || Sbjct 363938 ATTTGCATACCGCCGCGGAGACGGAGGACGAGATGGAGCGTGGACTCCTTCTGGATGTTG 363879 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| ||||| | ||| || | || ||||| ||||| || ||||||||||| Sbjct 363878 TAGTCGGCCAACGTGCGTCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGTTGG 363819 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| || |||| || | ||| ||||||||||| Sbjct 363818 TCGGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATAGTATCGGAG 363759 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||| || || |||||||| || || || || || ||||| || || || ||||| || Sbjct 363758 CTCTCGACCTCGAGAGTTATGGTCTTGCCGGTGAGAGTTTTCACGAAGATCTGCATATT 363700 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||||| ||||| || ||||| | || | || || ||||| || ||| Sbjct 364160 ATGCCTCCTCTCAGACGAAGAACAAGATGAAGAGTGGATTCCTTTTGTATATTGTAATCG 364101 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | || || ||||| ||||| | || || || |||||| Sbjct 364100 GCGAGGGTACGGCCATCCTCAAGCTGCTTACCGGCGAAAATCAGCCTTTGCTGGTCAGGA 364041 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| ||||| || || || | || | || || || ||||| ||| Sbjct 364040 GGAATTCCTTCCTTATCCTGAATCTTAGCCTTAACGTTGTCGATTGTGTCGGAGCTCTCG 363981 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||||||||| || || || ||||| ||||| |||||||| Sbjct 363980 ACCTCGAGAGTTATAGTTTTGCCGGTGAGGGTTTTAACAAAGATTTGCAT 363931 >seq41 Length=2736928 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || |||||||| || || | || ||| || || ||||| |||||||| || || || || Sbjct 677321 TGCTTTCCGGCGAAGATCAGTCGCTGCTGGTCTGGAGGGATTCCTTCCTTGTCCTGGATC 677380 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || || ||||||||||| ||||| ||||| || || || Sbjct 677381 TTGGCCTTGACATTATCGATGGTGTCAGAAGACTCAACCTCTAGGGTTATCGTCTTCCCC 677440 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || || || |||||||| Sbjct 677441 GTTAGGGTTTTCACGAAGATCTGCATTTT 677469 >seq1027 Length=3367805 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||| | |||||| |||| || | || | || || ||||| ||||| Sbjct 416379 ATGCCACCTCGGAGTCGAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATATTGTAGTCA 416438 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| |||| |||||||| |||||||| | ||||| || || || Sbjct 416439 GCAAGTGTGCGGCCATCCTCTAGCTGTTTTCCAGCAAAAATCAGCCTCTGCTGGTCGGGG 416498 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || || | || | ||| || || || || ||| Sbjct 416499 GGAATGCCTTCCTTATCCTGGATCTTAGCCTTGACATTGTCTATGGTGTCAGAGCTCTCC 416558 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || ||||||||||| ||||| Sbjct 416559 ACTTCCAGTGTGATTGTCTTGCCAGTGAGGGTCTTTACAAATATCTGCAT 416608 >seq229 Length=2021663 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| || || || || ||||| || || || || ||||||||||| || || || Sbjct 545590 TGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGGATC 545649 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| || || || |||||| || || || || || || || Sbjct 545650 TTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTTCCA 545709 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| |||||||| Sbjct 545710 GTGAGAGTTTTCACAAAGATTTGCAT 545735 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| || || || || ||||| || || || || ||||||||||| || || || Sbjct 547489 TGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCTTCTTTGTCCTGGATC 547548 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| || || || |||||| || || || || || || || Sbjct 547549 TTGGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGGGTGATGGTCTTTCCA 547608 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| |||||||| Sbjct 547609 GTGAGAGTTTTCACAAAGATTTGCAT 547634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899586656023680