Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq33 107 3e-18 seq167 100 4e-16 seq169 93.3 6e-14 seq1476 89.7 8e-13 >seq33 Length=1871104 Score = 107 bits (118), Expect = 3e-18 Identities = 356/553 (64%), Gaps = 9/553 (2%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || ||||| ||||| ||| ||||| || |||| || || || |||||| || ||| Sbjct 634287 AAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAGAAAGTT 634346 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||| | || | ||||||||||||||||| | ||||| | ||| || Sbjct 634347 AATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCAGAGAAA 634406 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 ||||| ||||| ||||| || || || | | ||| ||||| ||| | | || Sbjct 634407 AATATCCCCTCCACGCATGCAAAAGCGACAAGTCTCTCAGCGAAAGACT-----CCGATC 634461 Query 18335 AGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 || |||||| | ||||| || | | | ||| || | |||| || | Sbjct 634462 CGTCGATCCATCTCAAGGCCCACTCAGCCTTTTTAGCCACACAAGGAACGGTCTCGATCG 634521 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 | | ||| || || || || | |||||||| |||||||| || | ||| | | || Sbjct 634522 CGTGAAATAATCGATTCTTCTCGGTCGAATCTTTGATATAAGTCTCCAGTAAAAGACTAT 634581 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 |||| ||||| || || | || || || || ||||| | ||| || | | |||||| | Sbjct 634582 ACATCTCAGAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCAG 634641 Query 18513 GATATTGAATCTCGCT-ATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571 ||| | ||| | |||||| | | | | ||| || ||| || || |||| Sbjct 634642 AGACTTGGACCTCCTTCATAAAA-CGACCGGCAAGATTTTCGAGAACGATGCCATCAGAG 634700 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC 18631 | || || || || | |||| ||||| ||||| |||| | || | | Sbjct 634701 GCGGCAAAGAAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCC 634760 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 |||| | ||||| |||||||| || || || | |||||||| || | ||||| Sbjct 634761 CATTGGCGGAGATCTTGAGATAGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCT 634820 Query 18692 TGTTTGTACATTT 18704 | |||||||||| Sbjct 634821 TTCTTGTACATTT 634833 >seq167 Length=3484751 Score = 100 bits (110), Expect = 4e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || | ||||| || ||||| || || ||||| || ||| Sbjct 1287939 ATGCAGATATTTGTCAAGACTCTCACTGGCAAGACTATCACTTTGGAAGTTGAGAGTTCG 1287998 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||||||||||| || || || || || ||||| || Sbjct 1287999 GATACCATCGATAATGTCAAGGCCAAAATACAAGACAAGGAGGGTATTCCACCAGATCAG 1288058 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || || ||||| || ||| | || | | || |||||| Sbjct 1288059 CAAAGATTGATTTTTGCTGGGAAACAGCTAGAGGATGGTCGCACACTTGCTGACTATAAT 1288118 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | |||||||| || ||| Sbjct 1288119 ATTCAGAAAGAGTCTACGCTTCACTTGGTG 1288148 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || || || || || || || ||| Sbjct 1288395 ATGCAGATTTTTGTGAAGACCCTTACTGGAAAGACAATCACCTTGGAGGTAGAGAGCTCT 1288454 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || || || |||||||| || || || || ||||| || Sbjct 1288455 GACACAATTGATAATGTCAAGGCCAAGATCCAAGATAAGGAGGGGATCCCACCAGACCAG 1288514 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||| || |||||||| |||||| || ||| | ||||||||||| Sbjct 1288515 CAGAGGTTGATCTTTGCTGGGAAGCAGCTTGAAGATGGAAGGACTCTTGCAGATTATAAT 1288574 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || ||||| | || || ||||| ||| Sbjct 1288575 ATTCAGAAAGAATCTACTCTGCATTTGGTG 1288604 >seq169 Length=810068 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | || || |||||||| || | || ||||| || Sbjct 363931 ATGCAAATCTTTGTTAAAACCCTCACCGGCAAAACTATAACTCTCGAGGTCGAGAGCTCC 363990 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || ||| || || ||||| ||||| || ||||| || || Sbjct 363991 GACACAATCGACAACGTTAAGGCTAAGATTCAGGATAAGGAAGGAATTCCTCCTGACCAG 364050 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| |||||| |||||||||||||| || ||| | | || | | ||||| ||| Sbjct 364051 CAAAGGCTGATTTTCGCCGGTAAGCAGCTTGAGGATGGCCGTACCCTCGCCGATTACAAT 364110 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 ||| || || | || |||||| Sbjct 364111 ATACAAAAGGAATCCACTCTTCAT 364134 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| |||| |||||||| ||||| || || || ||||| || || ||| Sbjct 364386 AATGCAGATTTTTGTTAAGACATTGACCGGAAAGACCATCACTTTAGAGGTGGAGAGTTC 364445 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || || || |||||| || || || ||||| || || || || || Sbjct 364446 TGATACAATTGATAATGTAAAGGCTAAAATTCAGGACAAGGAAGGAATTCCACCTGATCA 364505 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | |||| ||| || ||||| | || ||| | | || | |||||||||| Sbjct 364506 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAGGATGGCCGTACACTTGCAGATTATAA 364565 Query 156002 TAT 156004 ||| Sbjct 364566 TAT 364568 >seq1476 Length=5289327 Score = 89.7 bits (98), Expect = 8e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| || || || | || || || | Sbjct 642976 ATGCAGATTTTCGTCAAGACCTTGACTGGAAAGACCATCACCCTGGAGGTTGAGAGCAGT 642917 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| |||||||| ||||| ||||| || || ||||| || ||||| || Sbjct 642916 GACACTATTGATAACGTGAAGGCAAAAATTCAAGACAAGGAGGGCATCCCACCAGACCAG 642857 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | ||||||||||| || |||||| | ||||||| | ||||| ||| Sbjct 642856 CAGAGGCTGATCTTCGCCGGTAAGCAACTGGAAGATGGCCGAACTTTGGCCGATTACAAT 642797 Query 156003 AT 156004 || Sbjct 642796 AT 642795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731816890038400