Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq169 129 1e-24 seq167 127 4e-24 seq100 100 5e-16 seq229 95.1 2e-14 seq33 95.1 2e-14 seq1027 91.5 3e-13 seq271 89.7 9e-13 >seq169 Length=810068 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | || | ||| | ||||| |||||||||||||| Sbjct 364614 ACCACCACGAAGGCGGAGCACAAGGTGGAGAGTTGATTCTTTCTGAATATTATAATCTGC 364555 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | || | || |||||||| || ||||||||||| | ||||| || |||||||| Sbjct 364554 AAGTGTACGGCCATCCTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCAGGTGG 364495 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| || || || |||||| ||||||||| || ||||| || || || Sbjct 364494 AATTCCTTCCTTGTCCTGAATTTTAGCCTTTACATTATCAATTGTATCAGAACTCTCCAC 364435 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 |||| ||| ||||| || || || ||||| |||| || ||||||||| Sbjct 364434 CTCTAAAGTGATGGTCTTTCCGGTCAATGTCTTAACAAAAATCTGCATT 364386 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || |||||||| || |||||||||||||| ||||| |||||||| || ||||| || Sbjct 363848 TGCTTTCCAGCAAAGATCAATCTCTGTTGGTCGGGTGGAATTCCTTCCTTGTCTTGGATC 363789 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || || |||||| |||||||| || || || || ||||| ||||| || || Sbjct 363788 TTGGCCTTGACATTATCGATAGTATCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCG 363729 Query 172044 GTTAATGTTTTAATGAATATCTGCATTTT 172072 || | ||||| | ||| |||||||| || Sbjct 363728 GTGAGAGTTTTCACGAAGATCTGCATATT 363700 >seq167 Length=3484751 Score = 127 bits (140), Expect = 4e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| | | | || | |||| || | |||||| ||||| || || ||||| Sbjct 2202769 AATATTATAATCGGCAAGGGTTCTTCCGTCTTCGAGTTGTTTTCCAGCGAAGATCAATCT 2202828 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| ||||| ||||| |||||||| || ||||| || || || |||||| || || Sbjct 2202829 CTGCTGGTCCGGTGGAATTCCTTCCTTGTCTTGGATCTTGGCCTTGACATTATCGATGGT 2202888 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || ||||| |||||||||||||| || || || || |||| ||| ||||| Sbjct 2202889 ATCAGAGCTCTCGACTTCAAGAGTAATGGTTTTGCCTGTCAAAGTCTTAACGAAGATCTG 2202948 Query 172067 CAT 172069 ||| Sbjct 2202949 CAT 2202951 Score = 107 bits (118), Expect = 3e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| | || | || | ||| | |||||| |||||||| |||| Sbjct 1288850 ACCACCACGGAGTCGGAGGACAAGGTGAAGAGTGGACTCTTTCTGGATATTATAGTCTGC 1288791 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | |||| | || || | |||||||||||||||||| |||| |||||||| || || Sbjct 1288790 AAGGGTTCGTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCGTTGTTGGTCCGGGGG 1288731 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || || || |||||| || ||||| || || || || || || Sbjct 1288730 AATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTGTCAATTGTGTCAGAGCTCTCAAC 1288671 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || || ||||||||||| || || | ||||| | || ||||||||| Sbjct 1288670 CTCGAGGGTAATGGTTTTCCCTGTCAGGGTTTTGACAAAAATCTGCATT 1288622 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||||| | || || || | |||| |||||| ||||||||| || Sbjct 1288168 ATACCACCACGGAGTCGGAGCACCAAGTGAAGCGTAGACTCTTTCTGAATATTATAGTCA 1288109 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||||| ||||||||||| ||||| || || || ||| Sbjct 1288108 GCAAGTGTGCGACCATCCTCTAGCTGTTTCCCAGCAAAAATCAATCTTTGCTGATCTGGT 1288049 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||||||||| || |||||| || ||||| || || Sbjct 1288048 GGAATACCCTCCTTGTCTTGTATTTTGGCCTTGACATTATCGATGGTATCCGAACTCTCA 1287989 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | ||| || || || ||||| | || || | ||||||||||| Sbjct 1287988 ACTTCCAAAGTGATAGTCTTGCCAGTGAGAGTCTTGACAAATATCTGCAT 1287939 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| | ||||| ||||| ||||||||||||| Sbjct 1288624 ATTCCACCACGCAGACGAAGCACCAAATGCAGAGTAGATTCTTTCTGAATATTATAATCT 1288565 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || | | | || || | || || |||||||| || || ||||| ||||| ||| Sbjct 1288564 GCAAGAGTCCTTCCATCTTCAAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGT 1288505 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || || |||||| || || || || ||| Sbjct 1288504 GGGATCCCCTCCTTATCTTGGATCTTGGCCTTGACATTATCAATTGTGTCAGAGCTCTCT 1288445 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || || || ||||| | || || | || |||||||| Sbjct 1288444 ACCTCCAAGGTGATTGTCTTTCCAGTAAGGGTCTTCACAAAAATCTGCAT 1288395 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 ||||| ||||| | | || | | | || ||||| || || ||||| || ||||| | | Sbjct 2202314 ATATTGTAATCAGCAAGAGTCCTTCCATCCTCCAACTGCTTTCCAGCGAAGATTAACCGC 2202373 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || || || || || ||||| || ||||| || ||| || || || || ||| Sbjct 2202374 TGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATCTTAGCCTTGACGTTGTCAATTGTA 2202433 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||| || || || || || || || ||||||| ||||| | |||||||||| Sbjct 2202434 TCGGAGCTTTCCACCTCCAGCGTTATAGTCTTTCCAGTTAGGGTTTTCACGAATATCTGC 2202493 Query 172068 AT 172069 || Sbjct 2202494 AT 2202495 >seq100 Length=1654266 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || || || | || | ||| || ||| ||||| || Sbjct 547028 ATTCCACCTCTAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCC 546969 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || ||||| ||||| |||||||| || || ||||| || ||||| Sbjct 546968 GCAAGGGTACGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCAGGG 546909 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || ||||| |||||| || ||||| ||||| ||| Sbjct 546908 GGAATCCCTTCCTTGTCCTGAATTTTGGCTTTTACGTTGTCAATAGTGTCTGAGCTTTCC 546849 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | ||||| | || || ||||| Sbjct 546848 ACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 546799 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||||||||| || | || || || | || | ||| || ||| ||||| || Sbjct 554097 ATTCCACCTCTAAGACGGAGAACCAAGTGGAGGGTTGACTCCTTTTGAATGTTATAGTCC 554038 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || ||||| ||||| |||||||| || || ||||| || ||||| Sbjct 554037 GCAAGGGTACGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAACCTCTGCTGATCAGGG 553978 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || ||||| |||||| || ||||| ||||| ||| Sbjct 553977 GGAATCCCTTCCTTGTCCTGAATTTTGGCTTTTACGTTGTCAATAGTGTCTGAGCTTTCC 553918 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | ||||| | || || ||||| Sbjct 553917 ACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATTTGCAT 553868 >seq229 Length=2021663 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | || || |||| ||| || ||||| ||||| | Sbjct 544368 ACCACCACGAAGGCGCAGGACAAGGTGCAAGGTAGACTCCTTCTGGATATTGTAATCGGC 544427 Query 171902 TAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 || | || | | || || | || || ||||||||||| |||||||| || ||||||| Sbjct 544428 -AAGGGTCCTCCCATCCTCAAGCTGCTTCCCAGCAAAAATCAATCTCTGCTGATCAGGTG 544486 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | || ||||| || ||||| |||||| || |||||| ||||| || || || | Sbjct 544487 GGATGCCTTCCTTGTCTTGGATTTTAGCCTTAACATTATCAATAGTGTCAGAACTCTCAA 544546 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || | |||||||| || ||||| | || || | || |||||||| Sbjct 544547 CCTCCAAGGTAATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 544595 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || || || | ||| || | || || || | ||| | ||| || |||||| || || Sbjct 547633 ATGCCTCCACGAAGGCGAAGCACCAAGTGGAGAGTGGACTCCTTCTGAATATTGTAGTCA 547692 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | || || | || || | || |||||||| ||||| | ||||| ||||||||| Sbjct 547693 GCAAGAGTGCGCCCATCCTCAAGCTGCTTACCAGCGAAAATCAGCCTCTGCTGGTCAGGT 547752 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| || || ||||| || ||||| || || ||||| ||| Sbjct 547753 GGGATCCCCTCTTTGTCCTGAATTTTTGCCTTAACATTGTCAATGGTGTCTGAGCTTTCC 547812 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATT 172075 || || || || || || || ||||| | ||||| | ||| |||||||| | ||| Sbjct 547813 ACCTCAAGGGTGATTGTCTTGCCAGTGAGGGTTTTGACGAAGATCTGCATCTGATT 547868 >seq33 Length=1871104 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 39117 TATAGTAAACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTA 39176 || || || || || ||||| || ||||| ||||| | || || || || ||| Sbjct 634281 TAGAGCAAGCACGCGAAATCGCAGTGCAAACCCTCGTCTCGCGAGATCAACTCGTTAGAG 634340 Query 39177 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 39236 ||||||||||| ||||| || || | |||||| ||||||||||| | |||||| | | Sbjct 634341 AAAGTTAATCCCGGCATCAACCCGCGCTTTTTTAGCCAAAATATGGCGCAAAAACTTCCA 634400 Query 39237 GAAAAGAATATACCCTCCACACACGCAAATGC 39268 || || ||||| |||||||| || ||||| || Sbjct 634401 GAGAAAAATATCCCCTCCACGCATGCAAAAGC 634432 >seq1027 Length=3367805 Score = 91.5 bits (100), Expect = 3e-13 Identities = 114/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || || | ||| || |||||||| || | || || ||||||||||| |||||||| ||| Sbjct 416682 TCCTCAAGTTGCTTTCCAGCAAAGATAAGCCTTTGCTGGTCAGGTGGGATTCCTTCCTTA 416741 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || | | | ||| ||||| ||||||||||| ||| || || || || ||| Sbjct 416742 TCCTGGA-TCTGGCTTTCACATTGTCGATAGTATCTGAACTTTCCACCTCAAGTGTGATG 416800 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| ||||| | ||| || | || |||||||| Sbjct 416801 GTTTTCCCAGTAAGTGTCTTCACAAAGATCTGCAT 416835 >seq271 Length=609135 Score = 89.7 bits (98), Expect = 9e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | || |||||||| | || || || || | ||| | || || ||||| | Sbjct 324058 TCATAGTTCCTCCTCTAAGCCTCAAAACCAAGTGAAGAGTTGATTCCTTCTGGATATTGT 324117 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | || || | || ||||||||||||||||||||||| ||||| ||||| | Sbjct 324118 AATCTGCAAGAGTTCTACCATCTTCCAATTGTTTACCAGCAAAAATCAATCTTTGTTGAT 324177 Query 171955 CAGGTGGTATTCCTTCTTTATC 171976 |||| || || ||||| || || Sbjct 324178 CAGGAGGGATCCCTTCCTTGTC 324199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905067843259200