Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq6024 600 1e-166 seq169 120 3e-22 seq135 89.7 6e-13 seq318 82.4 8e-11 >seq6024 Length=163856 Score = 600 bits (664), Expect = 1e-166 Identities = 730/990 (74%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 157579 TTTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 157638 |||||| | ||| |||| || | ||||| || || | || ||||| || || | Sbjct 1513 TTTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTT 1454 Query 157639 GATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157697 |||||| || ||| | ||| | ||||| ||||| || || |||| ||| | ||||| | Sbjct 1453 GATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCAC 1395 Query 157698 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 157757 | || || || || || || || |||||||| || |||| || || | ||||| |||| Sbjct 1394 CTCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACA 1335 Query 157758 ACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 157817 | || || |||||||| || | || |||| || || ||| | || || || || | Sbjct 1334 ATATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAA 1275 Query 157818 TCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAG 157877 | |||||||| ||||| ||||||| ||| | || || || ||||||| | || | | Sbjct 1274 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTG 1215 Query 157878 TATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACC 157937 | | || ||| | ||||| | | |||||||| ||||||||||||||| | || Sbjct 1214 TTCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCC 1155 Query 157938 GTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTG 157997 || | ||||||||||| ||||| ||| |||||||| ||||| || || || || ||| Sbjct 1154 GTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 1095 Query 157998 CTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTA 158057 |||| ||| | ||||||| | |||||||| || || |||| ||||||||| || | Sbjct 1094 CTGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 1035 Query 158058 TCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACC 158117 ||||||||||||| |||| ||| |||||||||| || || ||||||||||||||||||| Sbjct 1034 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACC 975 Query 158118 CGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACG 158177 | || || ||| | || || ||||| |||||||| || || || ||| ||||||||| | Sbjct 974 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 915 Query 158178 GAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTAC 158236 | | || || || | | | || | ||||| || |||| || || || | Sbjct 914 GTTCCTTGGTAACCTC-TAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 856 Query 158237 GGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTC 158296 ||||||| ||||||||||||||||| || ||||| ||||| || || ||||| || || Sbjct 855 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTT 796 Query 158297 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158356 || || |||||||||||||| ||| |||||||| || ||||| || || |||||| | Sbjct 795 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 736 Query 158357 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 158416 ||||| |||||||| || || || |||||||| || | || | ||| ||||| ||| Sbjct 735 GCTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 676 Query 158417 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 158476 ||||| || |||||||| |||||||| ||| | ||||| |||| |||||||| | || Sbjct 675 AACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAAT 616 Query 158477 ACCTGGGCAGATGTACTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAAC 158536 |||||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| Sbjct 615 ACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 556 Query 158537 GCACACAACTTCCCACTCGACCTTGCTGCT 158566 || || |||||||| || ||||| |||||| Sbjct 555 GCTCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 551 bits (610), Expect = 6e-152 Identities = 730/1008 (72%), Gaps = 4/1008 (0%) Strand=Plus/Plus Query 159306 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTT 159365 ||||||||| | | || || || |||||||| || ||||| || ||| | || || Sbjct 37260 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 37319 Query 159366 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 159425 || || ||| | ||| | || |||||| | || || ||| | ||||| || ||| Sbjct 37320 CCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTTGTAACCTCATGG 37379 Query 159426 TACACCCACGGTCTTGCTAGTTCCTATCTTGAGGG-TGCTAACTTTCTCACAGCAGCTGT 159484 || ||||| || | |||||||||||| | || || ||| ||||| | || || || || Sbjct 37380 TATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGC-AACTTCTTAACCGCTGCAGT 37438 Query 159485 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 159544 || || |||||| | | | | |||||| | | |||| |||||||| || | || Sbjct 37439 TTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCGAAGCACA 37498 Query 159545 GGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGG 159604 ||| |||| || ||||| ||| | || || || |||| |||||| || |||||||| Sbjct 37499 AGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTTGCTCTCCACGG 37558 Query 159605 TGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTAT 159664 ||| |||| ||||| ||||| ||| | ||||| |||||||| || || || || || Sbjct 37559 TGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA-TCCGTGCAAT 37617 Query 159665 C-CGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCC 159723 || ||||| ||||| || || ||||||||||| |||||||||||||| || |||| Sbjct 37618 TGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCC 37677 Query 159724 TCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAA 159783 | || || ||| | |||||||| |||||||||| || || ||||| || ||||| | Sbjct 37678 TGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGTGTAGCAGCTA 37737 Query 159784 TCTTTAGATTCCTGTTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATA 159843 | ||| ||||| | | || | ||||| ||||| ||||||||| | || || || |||| Sbjct 37738 TATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAACCCATTTCATA 37797 Query 159844 TGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTG 159903 ||||||| ||||| || || |||||| || || || | || || ||||| | ||||| Sbjct 37798 TGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCATGGTGCTACTG 37857 Query 159904 TAGAGAACACACTGTATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAA 159963 |||| || || | | ||||||||| || |||||||| || || ||| | ||| Sbjct 37858 TAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAA 37917 Query 159964 CTCAAGAGGAGGAGACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCG 160023 |||||| || || ||||| || ||||| || || |||||||| ||||| || ||||| | Sbjct 37918 CTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTTGGTCCCAAATCTTTG 37977 Query 160024 GTATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGG 160083 | |||| ||||| || || || ||| | |||||||| ||||| ||||| || || | | Sbjct 37978 GGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCG 38037 Query 160084 GTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATT 160143 || | |||| || |||| | | || || ||||| ||||| ||||| || || | Sbjct 38038 GTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATCTACGTGCCTATGACT 38097 Query 160144 TCGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAA 160203 |||| ||| |||||| | ||||| |||||||| ||||||||||| |||||||| |||| Sbjct 38098 TCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACTAAAA 38157 Query 160204 ACATCCTATTGAACGAAGGACTACGTGCATGGTTGGCACCTGCTGATCAACCCCATGAAA 160263 | || || || |||||||| | ||||| ||| |||| || ||||| || ||||||| Sbjct 38158 ATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAA 38217 Query 160264 ACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 160311 || |||| ||||| || || || | || | || ||||| ||||||| Sbjct 38218 ACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 38265 >seq169 Length=810068 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 158707 AACTCCTGAGGGAGAAACTGTCGTCCAATGTGAAGAGGATCAATACATTCTAGACGCAGC 158766 |||||| ||||| |||| || | |||| || || |||||||| || ||||| Sbjct 97477 AACTCCAGAGGGTGAAAAAGTAATAGAATGCCCTGATGACGTGTACATTCTGGATGCAGC 97418 Query 158767 AGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGC 158826 ||||||||||||||||| | ||||| ||| | || ||| |||||||||| ||||| Sbjct 97417 TGAAGAAGCAGGAGTTGACTTGCCATACTCATGTAGGGCAGGTTCTTGCTCTTCTTGTGC 97358 Query 158827 AGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCGTTCT-TAGACGATGATC 158885 ||| ||| ||||| ||| ||||||||| ||| || ||| | | || ||||| | Sbjct 97357 AGGGAAAGTTGTAGGAGGAGAGGTTGATCAGTCCGAT-GGTAGTTTTCTTGATGATGAAC 97299 Query 158886 AGATTGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGAT 158935 | || | || || | |||||||| ||||| || ||||| || |||||| Sbjct 97298 AAATGGAAGAGGGCTGGGTTCTTACTTGTGTTGCTTATCCCACTTCTGAT 97249 >seq135 Length=947859 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 158033 TTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAA 158092 || || |||| ||||||| | || ||||| ||||||| |||| ||| ||||||||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 158093 GCAGAACACAACATCCTTATGCACCCGTT 158121 || || || ||||||||||||||||| || Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATT 378223 >seq318 Length=904506 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Minus Query 159429 ACCCACGGTCTTGCTAGTTCCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTCTCG 159488 ||||| || | |||||||||||| | || ||| |||||| | || | || || || Sbjct 515867 ACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGTAACTTCTTAACCACTGCAGTTTCT 515808 Query 159489 ACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGG 159548 || |||||| | | | | |||||| | | |||| |||||||| | | || ||| Sbjct 515807 ACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCAAAGCACAAGGG 515748 Query 159549 AATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCC 159608 |||| | || ||||| ||| | || | || |||| |||||| || ||||||||||| Sbjct 515747 GATTTACT-CGTTGGTGTCAATTAGGCGATTTGTGGACTTTTGTTGCTCTCCACGGTGCT 515689 Query 159609 TTCGCCCTAATTGGTTTCAT 159628 | | ||||||| ||| || Sbjct 515688 GTTGGACTAATTGTTTTTAT 515669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548333107407680