Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq6024 508 7e-139 seq135 84.2 3e-11 >seq6024 Length=163856 Score = 508 bits (562), Expect = 7e-139 Identities = 706/987 (72%), Gaps = 8/987 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| || || | ||| |||| ||||||||||| || Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 72295 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 72354 |||||||| | | | || || || || || ||| | || ||||| ||||| ||| Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCACCT 1393 Query 72355 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 72414 || || ||||| || || || | ||||| ||| | || ||| | | ||||| ||||| Sbjct 1392 CCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAAT 1333 Query 72415 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 72474 || || |||||||| | |||| |||| || ||||| || || || || || || Sbjct 1332 ATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAATA 1273 Query 72475 TGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATT 72534 |||||||| || | | || || ||||| || || || |||||||| || || || || Sbjct 1272 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTT 1213 Query 72535 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 72594 | || ||| | |||| | || ||||||||| | |||||||||| | | | Sbjct 1212 CTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGT 1153 Query 72595 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 72654 || || ||| | |||||||| ||| ||||| ||||| ||||| | || || ||| Sbjct 1152 CTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 1093 Query 72655 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 72714 || ||| | | |||||| | ||||| || || |||||||||||||| ||||| ||| Sbjct 1092 GTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATC 1033 Query 72715 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 72774 || ||||| |||||||| ||| | || ||||| || || |||||||| || |||||||| Sbjct 1032 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCA 973 Query 72775 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGT 72834 || || ||| ||| ||||| ||| | ||||| ||| || |||||||| ||||| ||| Sbjct 972 TTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 913 Query 72835 TCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACGGC 72894 || | || || || | | ||||| || || ||||| || || | || | || Sbjct 912 TCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 853 Query 72895 TATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGT 72954 || | ||||| ||||| |||||||| ||||| || || || |||||||| || || || Sbjct 852 TACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGC 793 Query 72955 AGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCT 73014 |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| | ||| Sbjct 792 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCT 733 Query 73015 GTATTCCCTGTAGTCTGTGTATGGTTAACCTCAATGGGTATCTGTACAATGGCATTCAAC 73074 | | |||||||| || | ||||| || | | ||||| | || ||||| |||||| Sbjct 732 GCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAAC 673 Query 73075 CTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT--GCAA--ACGGAAAGATTGTACC 73130 || || || ||||| ||||||||||| || || ||| ||| || | | |||| Sbjct 672 CTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACC 613 Query 73131 AACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAA 73190 |||| ||| || ||||| | || |||||||| |||||||||||||||||| | || Sbjct 612 ----TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 557 Query 73191 TGCACACAACTTCCCACTAGACCTAGC 73217 ||| || |||||||| ||||||||||| Sbjct 556 TGCTCATAACTTCCCTCTAGACCTAGC 530 Score = 336 bits (372), Expect = 2e-87 Identities = 697/1038 (67%), Gaps = 21/1038 (2%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | ||||| |||||| ||| || |||||||| || | || ||||| ||| Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || ||||| || || | || | || ||||||||| ||| || || || Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 73484 GTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAATTTTTTA 73543 || ||||||||||| || ||||| | || || ||| | || || || || ||| Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAACTTCTTA 37427 Query 73544 ACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTTTGGGGA 73603 || || ||||| || || |||| | || | | | ||| | | || || || ||||| Sbjct 37428 ACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGT 37487 Query 73604 CCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTTGTA 73663 || || |||||||| ||| || || |||| ||||||||| || | |||| ||||| Sbjct 37488 CCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGTT 37547 Query 73664 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCAGGA 73723 || | || || | || ||||| |||||||| ||| | | || ||||| |||| || Sbjct 37548 GCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCGA 37607 Query 73724 CTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCGCAGTATTCACG 73783 || | || ||||| || ||| | || || || | || || || || Sbjct 37608 TCCGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTTTTGTT 37667 Query 73784 AGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCACCTTCATTCGGT 73843 | || || || ||||| |||| ||| | ||||||| || || ||| || ||| Sbjct 37668 TCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTTTTGGT 37727 Query 73844 GTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTTAAT 73903 || ||||| || ||||| | || | || | || || || || || || || || Sbjct 37728 GTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGCTGAAC 37787 Query 73904 CCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATACAT 73963 ||||||||||||||||| || || || || | |||| || | ||||| || || ||| Sbjct 37788 CCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTATTCAT 37847 Query 73964 GGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAGATT 74023 ||||| || ||| | || || || | |||||| ||| ||| Sbjct 37848 GGTGCTACTGTAGAAAATACTTTATTTGAAGATGG------------TGATGGTG----- 37890 Query 74024 CAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGACTTATAGTATGATT 74083 ||| |||| ||| | || || | || || || | ||||| |||||| ||| || Sbjct 37891 CAAA-TACA---TTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTT 37946 Query 74084 ACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTCTTA 74143 || |||||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 37947 ACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 38006 Query 74144 CACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 74203 || ||| ||||||| || ||||| || | ||| | |||| || | || | || Sbjct 38007 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 38066 Query 74204 GGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 74263 ||||| || || || || | || || ||||| || ||||| ||||| | ||||| ||| Sbjct 38067 GGTCTGGCTCTGAATCTACGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAA 38126 Query 74264 GACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGAGCA 74323 || || || ||||| || ||||||||||| || ||||| | || |||||||| | || Sbjct 38127 GATCCTGAATTTGAGACTTTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 38186 Query 74324 TGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTGCCA 74383 |||||| | || ||||| || ||||| ||| || | ||||| || || || | ||| Sbjct 38187 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCA 38246 Query 74384 CGAGGCAACGCACTATAA 74401 || || ||||| || ||| Sbjct 38247 CGTGGAAACGCTCTTTAA 38264 >seq135 Length=947859 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 72688 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 72747 || |||||||||||||| |||| ||||| |||| |||||||| ||| | || |||||| Sbjct 378311 TTTTCTGATGGTATGCCTATAGGAATCTCCAGTACTTTCAACTTTATGATTGTATTCCAA 378252 Query 72748 GCAGAACACAACATACTAATGCACCCCTT 72776 || || || ||||| || |||||||| || Sbjct 378251 GCTGAGCAGAACATCCTTATGCACCCATT 378223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572830462617920