Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq33 138 1e-26 seq972 87.8 2e-11 >seq33 Length=1871104 Score = 138 bits (152), Expect = 1e-26 Identities = 198/274 (72%), Gaps = 4/274 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| || ||||| || ||||| || ||||| || || || | |||| | |||||| Sbjct 634590 GAGTGAATATTCTCAATCGCGATTTGAAAGCCATAGAAAGCACGAGCCTCAGAGACTTGG 634649 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||||||||| || || ||||| || || ||| |||||||| || |||||| || Sbjct 634650 ACCTCCTTCATAAAACGACCGGCAAGATTTTCGAGAACGATGCCATCAGAGGCGGCAAAG 634709 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || ||||| || || ||||| ||| ||| | | || | | |||| ||| || Sbjct 634710 AAGGCAAGGACATGAGATATGAAGTGTTTCTCATCGGAGGTTAGGGCCTCCCATTGG-CG 634768 Query 869813 GTG-TC-GGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGT 869870 | | || | | | || || |||||||| || ||||| | ||||||||||| || |||| Sbjct 634769 GAGATCTTGAGAT-AGATCGACCTCCTCTGCAGTCCAAAAGGAGGCCTCGGCTTTCTTGT 634827 Query 869871 ACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 |||| ||||||| || |||| |||| ||||| Sbjct 634828 ACATTTCCCATATCTGTGGGTATTGGATTGGGAA 634861 >seq972 Length=662790 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||| | |||| ||| |||| || || |||| | |||| ||| || Sbjct 464288 GCTGCCAACTACTTGAACATAAAGGGGTTGCTGGACCTGACGTGCCTGACTGTTGCCGAC 464229 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| |||| ||||||||||| ||||| ||||| |||||| Sbjct 464228 ATGATCAAGGGGAAGACGCCTGAGGAGATCCGGAAGACATTTAATATCAAG 464178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106644842349608