Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq596 87.8 1e-12 seq271 84.2 2e-11 seq167 84.2 2e-11 seq100 84.2 2e-11 >seq596 Length=4721113 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| |||| || || ||||||||| |||| ||| || Sbjct 1300678 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTCGAGGTTGAGTCT 1300619 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| ||| | | || ||| ||||| ||||| ||||| | || ||| Sbjct 1300618 TCCGATACCATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCGGAC 1300559 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || | || || | || || ||||||||||| || | ||| || | || || ||| Sbjct 1300558 CAGCAGCGTCTAATCTTCGCTGGAAAACAGCTGGAAGACGGCAGGACCCTCGCAGACTAC 1300499 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| || || || || | ||| ||||| Sbjct 1300498 AACATTCAGAAGGAGTCGACTCTTCACCTGGTG 1300466 >seq271 Length=609135 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| ||||| | || |||||||||||| | |||| ||| |||||||| |||| Sbjct 324199 GACAAGGAAGGGATCCCTCCTGATCAACAAAGATTGATTTTTGCTGGTAAACAATTGGAA 324140 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| ||||| | || |||||||| || || || ||||| || | ||| |||| || Sbjct 324139 GATGGTAGAACTCTTGCAGATTACAATATCCAGAAGGAATCAACTCTTCACTTGGTTTTG 324080 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 324079 AGGCTTAGAGGAGGAA 324064 >seq167 Length=3484751 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---CT 110329 |||||||| ||||| ||||| ||||| ||||| ||||| ||| | || ||| || Sbjct 1288167 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAGACCATCACCTTGGAGGTTGAGAGCTCT 1288226 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || | | | | || ||| ||||| ||||| || || | ||| || Sbjct 1288227 GAC---ACCATTGACAATGTGAAAGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGAC 1288283 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || ||||| | ||| ||||| ||||| ||||||| | || | || || ||| Sbjct 1288284 CAGCAGAGGCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGGCGCACCCTTGCTGACTAC 1288343 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 |||||||| || || || || ||||| ||||| Sbjct 1288344 AACATTCAGAAGGAGTCCACCTTGCATTTGGTG 1288376 >seq100 Length=1654266 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| ||||| | || ||||| ||||| ||| | || ||| || | Sbjct 546799 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 546858 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | | |||||| || ||| ||||| ||||| | ||| ||||| Sbjct 546859 -GACACTATTGACAACGTAAAAGCCAAAATTCAGGACAAGGAAGGGATTCCCCCTGATCA 546917 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | ||| || |||||| |||| |||| | | || | ||||| || || Sbjct 546918 GCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTTGCGGACTATAA 546977 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||||| || || || | ||| |||| Sbjct 546978 CATTCAAAAGGAGTCAACCCTCCACTTGGT 547007 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| ||||| | || ||||| ||||| ||| | || ||| || | Sbjct 553868 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 553927 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | | |||||| || ||| ||||| ||||| | ||| ||||| Sbjct 553928 -GACACTATTGACAACGTAAAAGCCAAAATTCAGGACAAGGAAGGGATTCCCCCTGATCA 553986 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | || | ||| || |||||| |||| |||| | | || | ||||| || || Sbjct 553987 GCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTTGCGGACTATAA 554046 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||||||| || || || | ||| |||| Sbjct 554047 CATTCAAAAGGAGTCAACCCTCCACTTGGT 554076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412811290201832