Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq596 109 4e-19 seq167 95.1 1e-14 seq100 93.3 3e-14 seq1476 82.4 6e-11 >seq596 Length=4721113 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| |||| || || ||||||||| |||| ||| || Sbjct 1300678 AAGATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTCGAGGTTGAGTCT 1300619 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 |||||| ||| | | || ||| ||||| || || ||||| | || ||| Sbjct 1300618 TCCGATACCATCGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCGGAC 1300559 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || ||||||||||| |||| || || | || |||||| Sbjct 1300558 CAGCAGCGTCTAATCTTCGCTGGAAAACAGCTGGAAGACGGCAGGACCCTCGCAGACTAC 1300499 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| |||||||| || | ||| ||||| | | ||| |||| || Sbjct 1300498 AACATTCAGAAGGAGTCGACTCTTCACCTGGTGCTTCGCTTGAGAGGTGG 1300449 >seq167 Length=3484751 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||| ||||| ||||| ||||| ||| | || ||| ||| Sbjct 1288167 ATGCAAATCTTTGTGAAAACCTTAACTGGCAAGACCATCACCTTGGAGGTTGAGAGCTCT 1288226 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| ||||| || || || || | ||| || || Sbjct 1288227 -GACACCATTGACAATGTGAAAGCCAAGATCCAAGACAAGGAGGGTATTCCCCCAGACCA 1288285 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| ||||| | ||| ||||| ||||| ||||| | || | || |||||||| Sbjct 1288286 GCAGAGGCTTATCTTTGCTGGTAAGCAGCTCGAGGATGGGCGCACCCTTGCTGACTACAA 1288345 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| |||||||| || ||||| ||||| Sbjct 1288346 CATTCAGAAGGAGTCCACCTTGCATTTGGTG 1288376 >seq100 Length=1654266 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||| | || ||||| ||||| ||| | || ||| ||| Sbjct 546799 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 546858 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | |||||| || ||| || || ||||| | ||| ||||| Sbjct 546859 -GACACTATTGACAACGTAAAAGCCAAAATTCAGGACAAGGAAGGGATTCCCCCTGATCA 546917 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || |||||| |||| || | | || | |||||||| || Sbjct 546918 GCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTTGCGGACTATAA 546977 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||||| || | ||| |||| Sbjct 546978 CATTCAAAAGGAGTCAACCCTCCACTTGGT 547007 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| ||||| ||||| | || ||||| ||||| ||| | || ||| ||| Sbjct 553868 ATGCAAATCTTTGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCA 553927 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | |||||| || ||| || || ||||| | ||| ||||| Sbjct 553928 -GACACTATTGACAACGTAAAAGCCAAAATTCAGGACAAGGAAGGGATTCCCCCTGATCA 553986 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || |||||| |||| || | | || | |||||||| || Sbjct 553987 GCAGAGGTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGTACCCTTGCGGACTATAA 554046 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||||| || | ||| |||| Sbjct 554047 CATTCAAAAGGAGTCAACCCTCCACTTGGT 554076 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || ||||| || || || | ||| |||| ||| Sbjct 547026 AATGCAAATCTTTGTAAAGACACTCACTGGCAAGACAATCACTTTGGAAGTGGAGAGCTC 547085 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | |||||| ||||| || || || ||| | ||| |||| Sbjct 547086 A-GACACCATTGATAACGTAAAAGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATC 547144 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||| | ||| || |||||||| ||||| | | || | || ||||||| Sbjct 547145 AGCAGAGGCTTATCTTTGCTGGCAAACAGCTTGAGGATGGCCGTACCCTTGCCGACTACA 547204 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||| || |||||||| || | ||| ||||| Sbjct 547205 ACATCCAGAAGGAGTCCACCCTCCACTTGGTG 547236 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || ||||| || || || | ||| |||| ||| Sbjct 554095 AATGCAAATCTTTGTAAAGACACTCACTGGCAAGACAATCACTTTGGAAGTGGAGAGCTC 554154 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || | | | |||||| ||||| || || || ||| | ||| |||| Sbjct 554155 A-GACACCATTGATAACGTAAAAGCTAAGATCCAGGACAAGGAGGGCATTCCCCCAGATC 554213 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||| | ||| || |||||||| ||||| | | || | || ||||||| Sbjct 554214 AGCAGAGGCTTATCTTTGCTGGCAAACAGCTTGAGGATGGCCGTACCCTTGCCGACTACA 554273 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||| || |||||||| || | ||| ||||| Sbjct 554274 ACATCCAGAAGGAGTCCACCCTCCACTTGGTG 554305 >seq1476 Length=5289327 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || ||||| || || || || || || ||||| | || || | || Sbjct 643432 ATGCAGATCTTCGTCAAGACCTTGACTGGAAAGACTATTACTCTGGAGGTTGAAAGTAGC 643373 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | || || ||||||| ||||| ||||| | ||| |||||| Sbjct 643372 GACACCATCGATAATGTCAAGGCAAAGATTCAGGATAAGGAAGGAATTCCCCCAGATCAG 643313 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || |||||||| ||||||| || |||| || |||||| Sbjct 643312 CAGAGGCTGATCTTCGCCGGAAAACAGCTAGAGGACGGGCGTACCTTGGCCGATTACAAC 643253 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| |||||||| || | ||| | ||| Sbjct 643252 ATTCAGAAGGAGTCCACCCTTCACCTCGTG 643223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398847515462536