Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq169 107 3e-18 seq271 96.9 5e-15 seq167 91.5 2e-13 >seq169 Length=810068 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||||| || ||||| || || ||| | || || || | | Sbjct 364388 TGCAGATTTTTGTTAAGACATTGACCGGAAAGACCATCACTTTAGAGGTGGAGAGTTCTG 364447 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | |||||||| |||||| || || ||||| |||||||| ||||| | Sbjct 364448 ATACAATTGATAATGTAAAGGCTAAAATTCAGGACAAGGAAGGAATTCCACCTGATCAGC 364507 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || || ||||| || ||| | || | |||||||||||| Sbjct 364508 AGAGGCTTATTTTTGCTGGGAAGCAATTGGAGGATGGCCGTACACTTGCAGATTATAATA 364567 Query 146212 TACAAAAAGAATCGACTATCCA 146233 | || |||||||| ||| |||| Sbjct 364568 TTCAGAAAGAATCAACTCTCCA 364589 >seq271 Length=609135 Score = 96.9 bits (106), Expect = 5e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || ||||| || || || |||||||||||| | |||||||| ||||||||||| || ||| Sbjct 324196 AAGGAAGGGATCCCTCCTGATCAACAAAGATTGATTTTTGCTGGTAAACAATTGGAAGAT 324137 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 |||||| | ||||||| ||||| || || ||||| ||| | || || || || | Sbjct 324136 GGTAGAACTCTTGCAGATTACAATATCCAGAAGGAATCAACTCTTCACTTGGTTTTGAGG 324077 Query 146247 TTAAGAGGAGG 146257 | |||||||| Sbjct 324076 CTTAGAGGAGG 324066 >seq167 Length=3484751 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || || ||||| ||||| |||||| |||| || || | Sbjct 2202950 TGCAGATCTTCGTTAAGACTTTGACAGGCAAAACCATTACTCTTGAAGTCGAGAGCTCTG 2202891 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| || | ||||| || || || ||| || ||||| |||||||| || || | Sbjct 2202890 ATACCATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGAATTCCACCGGACCAGC 2202831 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||| | || || || || |||||| | || || ||||| | | |||||||||| Sbjct 2202830 AGAGATTGATCTTCGCTGGAAAACAACTCGAAGACGGAAGAACCCTTGCCGATTATAATA 2202771 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||| || | ||||| || | || || ||||||||| Sbjct 2202770 TTCAGAAGGAATCCACACTGCATTTGGTTCTCCGTTTGCGAGGAGGTA 2202723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786107201670080