Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jatropha_20curcas_20[refseq_20GCF_5F000696525.1_202014-06-02] 6,024 sequences; 318,527,106 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq6024 589 2e-163 seq169 129 6e-25 seq456 127 2e-24 seq214 98.7 1e-15 seq318 93.3 5e-14 >seq6024 Length=163856 Score = 589 bits (652), Expect = 2e-163 Identities = 727/989 (74%), Gaps = 4/989 (0%) Strand=Plus/Minus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 ||||| | ||| |||| ||| | |||||| | || |||| ||||| ||||| | Sbjct 1512 TTCTGTAACTGGATAACCAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1453 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGC-TTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || || | | |||||| |||| || ||| | || ||| | || ||||| Sbjct 1452 ATGATCCCTACTTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCACC 1394 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAA 157229 ||| || ||||| || |||||||| ||||| ||| |||| ||||| | ||||| ||||| Sbjct 1393 TCCGGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACAA 1334 Query 157230 CATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCAT 157289 || || |||||||| || ||||| |||| || || ||| | || || ||||| || Sbjct 1333 TATTATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCATTTTTACCCAAT 1274 Query 157290 CTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGT 157349 |||||||| ||||| ||||||| ||| | ||||| || ||||||| | || | || Sbjct 1273 ATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 1214 Query 157350 CTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 157409 | || ||| | | || | | || ||||| ||||||||||||||| || ||| Sbjct 1213 TCTACATTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCG 1154 Query 157410 TTTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGC 157469 | | ||||||||||| ||||| |||||| || || || || || || ||||| | ||| Sbjct 1153 TCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 1094 Query 157470 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 157529 || ||| | ||||||| | |||||||| || || |||| ||||||||| || || Sbjct 1093 TGTTTTCTTGATCTATCCAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 1034 Query 157530 CTCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCC 157589 |||||||||||| |||| |||| | || |||||||| |||||||| || |||||||| || Sbjct 1033 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCC 974 Query 157590 GTTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGG 157649 || |||||| | ||||| ||||| |||||||| || || | ||| ||||||||| || Sbjct 973 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 914 Query 157650 AAGTCTCGTTACTTCCTCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATG 157708 | || || | || | ||| || | ||||| || |||| || || || | | Sbjct 913 TTCCTTGGTAACCT-CTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 855 Query 157709 GTTACAAGTTCGGTCAAGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCG 157768 |||||| ||||||||||| ||||| || || || ||||| || || || ||||| || | Sbjct 854 GTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTG 795 Query 157769 GTCGCCTGATCTTCCAATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCG 157828 | || ||||||||||||| ||| |||||||| | | | || |||||| | | Sbjct 794 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 735 Query 157829 CCGCATGGCCTGTTGTCGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 157888 | || |||||||| || || || ||||||||||| | || | ||||| ||||| |||| Sbjct 734 CTGCTTGGCCTGTAGTAGGTATTTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCA 675 Query 157889 ACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACA 157948 |||| || |||||||| |||||||| ||| | ||||| |||| |||||||| | || | Sbjct 674 ACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATA 615 Query 157949 CCTGGGCAGATGTCCTGAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACG 158008 ||||||| ||| | | ||||| ||| ||||||||||||||||||||||| ||||| | Sbjct 614 CCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 555 Query 158009 CACACAACTTCCCACTGGATCTTGCTGCT 158037 | || |||||||| || || || |||||| Sbjct 554 CTCATAACTTCCCTCTAGACCTAGCTGCT 526 Score = 545 bits (604), Expect = 3e-150 Identities = 732/1015 (72%), Gaps = 10/1015 (1%) Strand=Plus/Plus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | || |||||| | |||| |||||||||||||| || ||||| || Sbjct 37248 TTTGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 37307 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 || | || | || || ||| | || | || |||||| | || || || || || Sbjct 37308 CTATTGCTCTTTCCTTGCGCCTATTTCGCCTTAGGGGGTTGGTTCACAGGTACAACCTTT 37367 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTTTCT 158953 | || |||||||| |||||| | |||| ||||||| | || || ||||| ||| | Sbjct 37368 GTAACCTCATGGTATACCCATGGATTGGCTAGTTCCTATTTGGAAGGCTGCAA-CTTCTT 37426 Query 158954 TACAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGG 159013 || || |||||||| ||||| ||| || | | | |||||| | | | || ||||| Sbjct 37427 AACCGCTGCAGTTTCTACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGG 37486 Query 159014 TCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGT 159073 ||| || || ||||||||||| | ||| ||| | || || | |||| |||||| Sbjct 37487 TCCCGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTTTGTGGACTTTTGT 37546 Query 159074 GGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCACG 159133 || ||||||||||| || | ||||| ||||| ||| | || || |||||||| || || Sbjct 37547 TGCTCTCCACGGTGCTTTCGGACTAATAGGTTTTATGTTACGTCAATTTGAACTTGCTCG 37606 Query 159134 TCTCATCGGTA----TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTT 159189 ||| || | || || || ||||| || || ||||||||||| |||||||||| Sbjct 37607 ----ATCCGTGCAATTGCGACCTTATAATGCAATCGCATTCTCTGGTCCAATTGCTGTTT 37662 Query 159190 TTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCT 159249 |||| || ||||| || || ||||| |||||||| |||||||||| || || | Sbjct 37663 TTGTTTCTGTATTCCTGATTTATCCACTAGGTCAGTCTGGTTGGTTTTTTGCGCCTAGTT 37722 Query 159250 TTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACAC 159309 |||| || || || ||||| | ||| | ||||| | |||||||| || || ||||| | Sbjct 37723 TTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTCATAACTGGACGC 37782 Query 159310 TAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTA 159369 | ||||| || ||||||||||| ||||| || | |||||| || || |||| |||| Sbjct 37783 TGAACCCATTTCATATGATGGGGGTTGCCGGCGTATTAGGTGCTGCTCTGCTATGCGCTA 37842 Query 159370 TTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTA 159429 ||||||| | || || |||||||| |||| || ||||| || ||||| || || Sbjct 37843 TTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCC 37902 Query 159430 AGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCT 159489 || ||| | ||||||||| || || |||||||| ||||| || || |||||||| | Sbjct 37903 GTGCTTTTAACCCAACTCAAGCCGAAGAAACTTATTCAATGGTTACCGCTAACCGCTTTT 37962 Query 159490 GGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGT 159549 |||| || ||||| || |||| ||||| || || || ||| | |||||||||||||| | Sbjct 37963 GGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTAT 38022 Query 159550 TTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATC 159609 |||| || || | ||| |||||| | |||| | | ||||| ||||| |||| Sbjct 38023 TTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTCTGAATC 38082 Query 159610 TTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAA 159669 | ||||| || || ||||| ||| |||||| | ||||| |||||||| |||||||| | Sbjct 38083 TACGTGCCTATGACTTCGTTTCTCAGGAGATCCGTGCAGCGGAAGATCCTGAATTTGAGA 38142 Query 159670 CGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTG 159729 | |||||||| || || ||||| | || ||||| | ||||||||| |||| || | Sbjct 38143 CTTTCTACACTAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAG 38202 Query 159730 ATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 |||| || ||||||||| | || ||||| || || ||||||||| | || ||||| Sbjct 38203 ATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 38257 >seq169 Length=810068 Score = 129 bits (142), Expect = 6e-25 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 158179 AACTCCTGAGGGAGAAACAGTTATCCAGTGTGAAGAGGATCAATACATTCTAGACGCAGC 158238 |||||| ||||| |||| ||| || | || || || |||||||| || ||||| Sbjct 97477 AACTCCAGAGGGTGAAAAAGTAATAGAATGCCCTGATGACGTGTACATTCTGGATGCAGC 97418 Query 158239 AGAAGAAGCAGGAGTTGATATTAACTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGC 158298 ||||||||||||||||| | ||||| ||| | || ||| |||||||||| ||||| Sbjct 97417 TGAAGAAGCAGGAGTTGACTTGCCATACTCATGTAGGGCAGGTTCTTGCTCTTCTTGTGC 97358 Query 158299 AGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCG-TTCCTAGACGATGATC 158357 ||| ||| ||||| ||| ||||||||| ||| || | || || || ||||| | Sbjct 97357 AGGGAAAGTTGTAGGAGGAGAGGTTGATCAGTCCGAT-GGTAGTTTTCTTGATGATGAAC 97299 Query 158358 AAATCGCAGCAGGATTTGTTCTTACGTGTGTAGCATATCCAACATCTGAT 158407 |||| | || || | |||||||| ||||| || ||||| || |||||| Sbjct 97298 AAATGGAAGAGGGCTGGGTTCTTACTTGTGTTGCTTATCCCACTTCTGAT 97249 >seq456 Length=400266 Score = 127 bits (140), Expect = 2e-24 Identities = 302/451 (67%), Gaps = 8/451 (2%) Strand=Plus/Minus Query 159246 TCCTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGG 159305 |||||| | || || | ||||| | ||| | |||| | |||| ||| | || | | Sbjct 321070 TCCTTTTGTGTAGCAACTATATTTCGATTCATCTTCTTTTTCCAAGAGTTTTATAACTAG 321011 Query 159306 ACACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATC- 159364 | | ||||| || ||||||| ||||||||| || || | | | ||||| || | Sbjct 321010 ATGTTGAACCCATTTCATATGACGGGAGTTGCCGGCATATTGTATTGGGCACTGCTCTGC 320951 Query 159365 --TGC--TATTCATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAA 159420 ||| ||||||| | || | || ||||| || |||| || ||||| || | || Sbjct 320950 TATGCACTATTCATAGTGTTATTGTAGAAAAGACTTTATCTGAAGATGGTGATGGTGTAA 320891 Query 159421 ACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAA 159480 |||| || | | ||| | |||||||| || || |||||||| | |||||||| | Sbjct 320890 ACACTTTGCATACCTTTAAACCAACTCAATCTGAAGAAACTTATTCAGTCGTCACTGCCA 320831 Query 159481 ACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCT 159540 ||| ||| ||||| || ||||| || ||||| |||||||| || | || | |||||| Sbjct 320830 ACCACTTTTGGTCTCAAATCTTTGG-ATTGCTTTTTCTAATAAATGTTGATTATATTTCT 320772 Query 159541 TTATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTG 159600 ||||||| | | | || || || | | ||| || | || | || | | | | Sbjct 320771 TTATGTTATCTATACCAGTAATCGATTTATAGATGAGTGCTCTTAGAATAGTCGATTTGA 320712 Query 159601 CTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAG 159660 || ||||||| |||| || || || | |||||| ||| | || ||| |||| | Sbjct 320711 CTTTCAATCTATGTGCCTATGACTTTGCTTCTCAAGAAATC-TATAAGAGGAAAATCCTG 320653 Query 159661 AATTTGAAACGTTCTACACCAAGAACATTCT 159691 || || | || |||||||| || || ||||| Sbjct 320652 AA-TTCAGACTTTCTACACTAAAAATATTCT 320623 >seq214 Length=442246 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/212 (71%), Gaps = 9/212 (4%) Strand=Plus/Plus Query 159189 TTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCC-GTC 159247 |||||| | | ||||| || || || || |||||||| |||||||||| || || || Sbjct 75037 TTTGTC--CATATTCCTGATTTATCCTCTGGGTCAGTCTGGTTGGTTTTTTGCGCCAGT- 75093 Query 159248 CTTTGGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGAC 159307 ||||| || || || ||||| | ||| | ||||| | |||||||| | || || Sbjct 75094 -TTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTCCAAGGGTTTAATAACTG--- 75149 Query 159308 ACTAAACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGC 159367 || ||||| || ||||| ||||| ||||| | | |||||| || || || || Sbjct 75150 -CTGAACCCATTTCATATCATGGGGGTTGCCAGCGTATTAGGTGCTGCTCTGTAATGCGC 75208 Query 159368 TATTCATGGGGTCACAGTTGAAAATACATTAT 159399 ||||||||| | || || |||||||| |||| Sbjct 75209 TATTCATGGTGGTACTGTAGAAAATACTTTAT 75240 >seq318 Length=904506 Score = 93.3 bits (102), Expect = 5e-14 Identities = 142/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 158909 TACACATGGACTCGCTACTTCCTATCTTGAGGGTGCAAACTTTCTTACAGCAGCAGTTTC 158968 ||| |||||| | |||| ||||||| | || ||| ||||| | || | |||||||| Sbjct 515868 TACCCATGGATTGGCTAGTTCCTATTTGGAAGGTTGTAACTTCTTAACCACTGCAGTTTC 515809 Query 158969 GACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGG 159028 ||||| ||| || | | | |||||| | | | || |||||||| | || ||||| Sbjct 515808 TACTCCTGCTAATAGTTTAGCGCATTCTTTGTTATTACTATGGGGTCCCAAAGCACAAGG 515749 Query 159029 GGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGC 159088 |||||| || | ||| ||| | || | | |||| |||||| || ||||||||||| Sbjct 515748 GGATTTACTC-GTTGGTGTCAATTAGGCGATTTGTGGACTTTTGTTGCTCTCCACGGTGC 515690 Query 159089 CTTTGCCCTAATTGGTTTCAT 159109 ||| ||||||| ||| || Sbjct 515689 TGTTGGACTAATTGTTTTTAT 515669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545232540897920